Protein Alignment mod and ssx

DIOPT Version :10

• Sequence 1: NP_524614.2
• Gene: mod / 43764
• FlyBaseID: FBgn0002780
• Length: 542
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 298
• Identity: 64/298 - (21%)
• Similarity: 118/298 - (39%)
• Gaps: 49/298 - (16%)

  Fly    59 SEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYNSDDEEDDDDD-----ELEPGEVS 118
            |..|:...:|.:|||..|      .|.:|         :....||..|||||     :.|.|:
  Fly     2 SNADKMQDQEHDDEQSSD------IEGSG---------DNVGRDDGTDDDDDSNGNMQQENGD-- 49

  Fly   119 KSEGADEVDESDDDEEAPVEKPVSKKSEKANSEKSEENRGIPKVKVGKIPLGTPKNQIVFVTNLP 183
            ...|.|..:.|.|:|:           ..:...:..:|....:.::.::...:..|.|  :..||
  Fly    50 GGNGGDGQEHSGDEEQ-----------HHSQDNEGNDNSAGQQQQMQQVDRTSATNLI--INYLP 101

  Fly   184 NEYLHKDLVALFAKFGRLSALQRFTNLNGNKSV---LIAFDTSTGAEAVLQAKPKALTLGDNVLS 245
            .:...::|..||:..|.::..:...:.....|.   .:.:.|.:.:|..:| |.....:.:..|.
  Fly   102 QDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQ-KLNGFYVRNKRLK 165

  Fly   246 VS--QPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPR----AFVRLAS 304
            ||  :|..:...:....|:.| ..||..|.|...|.....:....|..::|..|    ||||...
  Fly   166 VSYARPGGQSIKDTNLYVINL-SRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNK 229

  Fly   305 VDDIPKALK-LHST--ELFSRFITVRRISQESISRTSE 339
            .::..:|:| |::|  |..|:.|.||...:...::.::
  Fly   230 REEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQ 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
mod	NP_524614.2	RRM_SF	177..244	CDD:473069	11/69 (16%)
		PABP-1234	262..>470	CDD:130689	22/85 (26%)
		RRM_SF	339..414	CDD:473069	0/1 (0%)
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	41/196 (21%)