Protein Alignment mod and Pabpc2

DIOPT Version :10

• Sequence 1: NP_524614.2
• Gene: mod / 43764
• FlyBaseID: FBgn0002780
• Length: 542
• Species: Drosophila melanogaster
• Sequence 2: NP_035163.1
• Gene: Pabpc2 / 18459
• MGIID: 1349723
• Length: 628
• Species: Mus musculus
• Alignment Length: 265
• Identity: 61/265 - (23%)
• Similarity: 112/265 - (42%)
• Gaps: 45/265 - (16%)

  Fly   177 VFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKS-VLIAFDTSTGAEAVLQAKPKALTLG 240
            ||:.||.....:|.|...|:.||.:.:.:..::.||:|. ..:.|:|...||..:: |...:.|.
Mouse   101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIE-KMNGMLLN 164

  Fly   241 DNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTF---------------FEKVAPVEAVTIS 290
            |..:.|.:.::::   ||...:|......|...:|.|               |.::..|:.:|..
Mouse   165 DRKVFVGRFKSQK---EREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDE 226

  Fly   291 SNRLMPRAFVRLASVDDIPKAL-KLHSTELFSRFITVRR-----------------ISQESISRT 337
            ..:.....||.....:|..||: :::..||..:.|.|.|                 ::|:...|.
Mouse   227 GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRY 291

  Fly   338 SELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVVC----SKAVLAFVTFKQSDAATKALAQL 398
            ..:.|.|:|:  .:....:.|:|.|..||.:....|:.    ||. ..||.|...:.||||::::
Mouse   292 QGINLYVKNL--DDGIDDERLQKEFSPFGTITSTKVMTEGGRSKG-FGFVCFSSPEEATKAVSEM 353

  Fly   399 DGKTV 403
            :|:.|
Mouse   354 NGRIV 358

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
mod	NP_524614.2	RRM_SF	177..244	CDD:473069	19/67 (28%)
		PABP-1234	262..>470	CDD:130689	39/179 (22%)
		RRM_SF	339..414	CDD:473069	20/69 (29%)
Pabpc2	NP_035163.1	PABP-1234	11..607	CDD:130689	61/265 (23%)