DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2053 and rcd1

DIOPT Version :9

Sequence 1:NP_001287632.1 Gene:CG2053 / 43762 FlyBaseID:FBgn0039887 Length:298 Species:Drosophila melanogaster
Sequence 2:NP_594984.1 Gene:rcd1 / 2542094 PomBaseID:SPAC29B12.06c Length:283 Species:Schizosaccharomyces pombe


Alignment Length:244 Identity:93/244 - (38%)
Similarity:148/244 - (60%) Gaps:1/244 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VFGWIANLCNKETRLWAMLELFERRTHIDSLGLLLWHSFGAVSGLLQEIVSIYPAIYQEIELTGQ 81
            |:.||..|.:..:|..|::||..:|...:.|.|:||||:|.::.|||||:|:|| :.....|||.
pombe    14 VYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYP-LLNPPTLTGP 77

  Fly    82 QSHRICTAIGLIQAMASHPFIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGVICGLLKSD 146
            .|:|:|.|:.|:|.:||||...|..:......:|.|.|...|:::..|::||:.||||..|:|:|
pombe    78 TSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGALVKND 142

  Fly   147 HPEIVSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLARKLHLIHTLAR 211
            .||::::.|.||:|||.||.:|.|:.:||.:..|::.:.|..:|||::..:...|...:...|..
pombe   143 SPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYERFYAVASVLNN 207

  Fly   212 VVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLPAQIRNGYFCQ 260
            :|.||......|:||||:|.|.||:|:|:..|.:...||..:|:..|.|
pombe   208 MVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQ 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2053NP_001287632.1 Rcd1 28..258 CDD:281998 87/229 (38%)
rcd1NP_594984.1 Rcd1 1..280 CDD:295198 93/244 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53719
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12262
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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