DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP100F and abr

DIOPT Version :9

Sequence 1:NP_001163786.1 Gene:RhoGAP100F / 43758 FlyBaseID:FBgn0039883 Length:1866 Species:Drosophila melanogaster
Sequence 2:XP_012812699.1 Gene:abr / 779766 XenbaseID:XB-GENE-5797083 Length:1019 Species:Xenopus tropicalis


Alignment Length:1041 Identity:223/1041 - (21%)
Similarity:349/1041 - (33%) Gaps:364/1041 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   358 EPPN-----WGYKPPPPPSSVITEQPTKAHAFAPSHAYYQNAGT-----LESLAEKVHAFYPGQP 412
            |||.     ...|||||      ..|.:|....|...|....|:     |::|........||..
 Frog    67 EPPKPFPRVRSNKPPPP------VPPQRAPPPLPDRDYEDERGSTERFVLDNLLSPAGELRPGGG 125

  Fly   413 GGPPVGPSRRMSTGTGNVGL-------AQQHARFPRSGSDQHLPRVEYSDYSNSLGRHSLLRS-S 469
            |........|.|.......|       :.:|:. |..|||.:|.    ||....       || .
 Frog   126 GEEETAGRERGSRAEKRRDLLTVPGWDSPRHSS-PERGSDDYLS----SDLEED-------RSID 178

  Fly   470 LKPGTTGGAPMQVGVGGTLGRYGRYDQQRAGVSKYGPPSGGAQSLTRRSRPNLDYSSDTEATIGP 534
            ...||.|                 ||.:  |..::.....|::::     |.:|.|    .|:.|
 Frog   179 FNYGTDG-----------------YDAE--GNEEHKSSREGSETM-----PYIDES----PTMSP 215

  Fly   535 RPSYYYYNRPAIGSMSRGSGGAGGGVGAASTAALLAGAADLNKFNSLPRERPGTRLQGIRSRMGD 599
            :             :|..|..:..||....|..||.|....:....|.|:   ..|.|:      
 Frog   216 Q-------------LSARSQDSVDGVSPTPTEVLLPGGESESDKGLLMRK---LVLSGV------ 258

  Fly   600 RLVDEN------------------DGNTSAPEFDVRRGRD------------------------- 621
             |..|.                  ..:||.|...:::..|                         
 Frog   259 -LASEEIYINQLEALLLPMKPLKATASTSQPVLTLQQINDIFYKIEDIYQMHKDFYDKLCPIVLQ 322

  Fly   622 ---------LRQRITASPSIFTA--DEYRAWLRRAPSSS-------AIAEQMRM--TRDMFAQPR 666
                     |.|::.:...::.|  |.|:..|..|...|       .|:|.:::  .:|...||:
 Frog   323 FDNKTTVGHLFQKLASQLGVYKAFVDNYKFALETAEKCSQCNVQFFKISEDLKVKGPKDSKEQPQ 387

  Fly   667 A-----------QRFSCSAENIHDALRNT-----------ESIYSSRNHILGTG-TLD-RNMGLT 707
            :           .|.:.|...:||.|::|           :::..|:|.:.... .:| |...:|
 Frog   388 SVTMEALLYKPIDRVTRSTLVLHDLLKHTPTDHPDYPLLQDALRISQNFLSSINEDIDPRRTAVT 452

  Fly   708 RPISALPVRSMSSQHIGGAGSIR-SPSIRRMRQLLELSAGPASPSGSILSTGGHQS--------- 762
            .|      :....|.:.....:. |.:.|::|.|...:...........:.|.||.         
 Frog   453 TP------KGEPRQLVKDGFLVELSENSRKLRHLFLFTDLLLCAKLKKTTVGKHQQYDCKWYIPL 511

  Fly   763 -----PAPTPSATLPRPH-----------RQIDINPAEFAK------------------------ 787
                 |:|..|..:|:.|           .:|.:..:|..|                        
 Frog   512 ADLVFPSPEESEPIPQLHATPDHEIEEMKAKISVLKSEIQKERKSNKGSSRTIERLKKKMFEYES 576

  Fly   788 --------------------------------------YKLDK---------------------- 792
                                                  .||.|                      
 Frog   577 WLLLYSPTIPFRIHNKNGKSYFFLLSSDYERSEWREAIQKLQKKDLQALALSPFELQVLTASCFK 641

  Fly   793 -------PIV------DIGGISGMLWIHLLAGRGLRTAPEGAAGTATQGQTRDLYCVIECDR--- 841
                   ||:      :..|:.|.|.:.:.:.:|.             ..:.:|||.:|.|.   
 Frog   642 LRTVHNVPIISHKDDDESPGLYGFLHVIVKSAKGF-------------SHSSNLYCTLEVDSFGY 693

  Fly   842 -VHKARTVVRSGDLQFDWDESFELDLVGNKQLDVLVYS--WDPQHRH--------KLCYRGAISL 895
             |.||:|.|.....:.:|:|.||::|.|::.|.:|.|.  :|....:        |:..:|.|.|
 Frog   694 FVSKAKTRVFRDTTEPEWNEEFEIELEGSQCLRILCYEKCYDKSKLNKDNNEIVDKIMGKGQIQL 758

  Fly   896 SSILRQSP------LHQLALKVEPRGTIYIRMRHTDPLALYKRRGLPSLRAGYPTLFGADLETVV 954
            ...:.||.      :....:|||      ..|:.:......||  .||.:  ...:||..:..|.
 Frog   759 DPQVVQSKNWHDDVIEMNGIKVE------FSMKFSSRDMSLKR--TPSKK--QTGVFGVKISVVT 813

  Fly   955 NRESKNAPGSAPVPIVLRRCVEEVERRGLDIIGLYRLCGSATKKRLLREAFERNSRAVELTPEHV 1019
            .||      .:.||.::|:|:||||:||::.:|:||:.|.||..:.|:.:|:.||:.:.:....:
 Frog   814 KRE------RSKVPYIVRQCIEEVEKRGIEEVGIYRISGVATDIQALKASFDANSKDILMMLSDM 872

  Fly  1020 PDINVITGVLKDYLRELPEPLFTRCLFQMTVDALAVCLPDDPEGNAKLMLSILDCLPRANRATLV 1084
             |||.|.|.||.|.|||||||.|..|:...::.:|:   .||......|:.:|..||..|..|.:
 Frog   873 -DINAIAGTLKLYFRELPEPLLTDRLYLAFMEGIAL---SDPAAKENCMMHLLRSLPDPNLMTFL 933

  Fly  1085 FLLDHLSLVVSNSERNKMSAQALATVMGPPLMLHSASAQPG-----ADI---DHAQPIAVLKYLL 1141
            |||.||..|......||||...||||.||.|:..|.....|     :||   |....:.||.|.|
 Frog   934 FLLQHLKRVAEKEPINKMSLHNLATVFGPTLLRPSEVESKGHMNLASDIWSHDVMAQVQVLLYYL 998

  Fly  1142 Q 1142
            |
 Frog   999 Q 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP100FNP_001163786.1 PDZ_signaling 177..260 CDD:238492
C2 804..905 CDD:175973 28/120 (23%)
RhoGAP_SYD1 946..1144 CDD:239844 78/205 (38%)
abrXP_012812699.1 Bcr-Abl_Oligo 3..65 CDD:312543
RhoGEF 254..442 CDD:214619 29/194 (15%)
PH_ABR 436..620 CDD:270172 22/189 (12%)
C2_ABR 666..786 CDD:176068 32/138 (23%)
RhoGAP_Bcr 805..1000 CDD:239852 78/205 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D332603at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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