DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP100F and RhoGAP1A

DIOPT Version :9

Sequence 1:NP_001163786.1 Gene:RhoGAP100F / 43758 FlyBaseID:FBgn0039883 Length:1866 Species:Drosophila melanogaster
Sequence 2:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster


Alignment Length:616 Identity:157/616 - (25%)
Similarity:249/616 - (40%) Gaps:118/616 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   578 FNSLPRERPGTRLQGIRSRMGDRLVDE--NDGNTSAPEFDVRRGRDLRQRITASPSIFTADEYRA 640
            ||.|.||.|.........|...:::..  |..|.......:...|:||:.:..|..:...|.:|.
  Fly   825 FNDLLRETPNAHPDHQPLRQAQKIIQMFLNQFNVVNQRLPIESNRNLRRMVRNSFIVELVDGHRK 889

  Fly   641 WLRRA---PSSSAIAEQMRMTRDMF------------------AQPRAQRFSCSAENIHDALRNT 684
             ||..   ....|.|:...:.||..                  |.|..:....|..||....||.
  Fly   890 -LRHLFLFNDVIACAKYKALGRDRIDYELKWFIPLKDVSIYEEADPAVELKESSPANISQVKRNL 953

  Fly   685 ESIYSSRNHILGTGTLDRNMGLTRPISALPVRSMSSQHIGGAGSIRSPSIRRMRQLLELSAGPAS 749
            .|:                    |...|:.|.:      .|:|:.||....| |:|.:|.:....
  Fly   954 RSV--------------------RDQLAMEVAN------SGSGAFRSGDKYR-RKLADLESQLVL 991

  Fly   750 PSGSILSTGGHQSPAPTPSATLPRPHRQID-INPAEFAKYKLDKPIVD-IGGISGMLWIHLLAGR 812
            .:.:::...|:::...|.:..|.....:.. |:.....|.|.:.|..: |..:....:| :...:
  Fly   992 ATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFI-VAMQK 1055

  Fly   813 GLRTAP-------------------EGAAGTATQGQTRDLYCVIECDR----VHKART--VVRSG 852
            |::|..                   .|..|.....|..|||..:|.|.    ..||.|  :.||.
  Fly  1056 GMKTEMGSYLMRNTNDESLLVGDLYMGVHGLEGLEQANDLYICVEVDSYGHYFRKATTKKICRSQ 1120

  Fly   853 DLQFDWDESFELDLVGNKQLDVLVYSWDPQHRHKLCYRGAISLSSILRQSPLHQLALKVEPRGTI 917
            ...  |:|||.|:|.|::.:.:|:|  :.:.|..|..:..:.||       |..|....:|:.  
  Fly  1121 TPL--WNESFMLELEGSQNVRILLY--EAKERPLLKAKHILKLS-------LSWLTETTQPKS-- 1172

  Fly   918 YIRMRHTDPLALYKR-------RGLPSLRAGYPTLFGADLETVVNRESKNAPGSAPVPIVLRRCV 975
             |::..|..|....|       ||  |.:.|  .||||.:..|:.||.::      :|.::..|:
  Fly  1173 -IKLTETLELGCSFRFIPGELFRG--STKPG--ALFGAKMSQVLKREKRD------IPFIIGACI 1226

  Fly   976 EEVERRGLDIIGLYRLCGSATKKRLLREAFERNSRAVELTPEHVPDINVITGVLKDYLRELPEPL 1040
            .||||||:..:|.||:.|||:....|::|||.::...|.....| ||:.:||:||.:||||||.|
  Fly  1227 REVERRGMLEVGCYRVSGSASDLAKLKKAFESDAYEAEQLLREV-DIHSVTGILKTFLRELPEAL 1290

  Fly  1041 FTRCLFQMTVDALAVCLPDDPEGNAKLMLSILDCLPRANRATLVFLLDHLSLVVSNSERNKMSAQ 1105
            ||..|:....|..:....::.......:|.:.:.||:||:|::..:||||..|......||||..
  Fly  1291 FTDQLYPRFFDTFSAFSNNNESTRINELLKVFEELPQANKASITSILDHLIRVHEKETDNKMSLH 1355

  Fly  1106 ALATVMGPPLMLHSASAQPG-ADIDHAQPIA 1135
            .||.|.||.|:      :|| ..:....|:|
  Fly  1356 NLAMVFGPTLL------RPGQTQVKQKDPLA 1380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP100FNP_001163786.1 PDZ_signaling 177..260 CDD:238492
C2 804..905 CDD:175973 29/125 (23%)
RhoGAP_SYD1 946..1144 CDD:239844 68/191 (36%)
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619 8/31 (26%)
PH_BCR_arthropod 851..1037 CDD:270174 39/213 (18%)
C2 1079..1187 CDD:301316 32/121 (26%)
RhoGAP 1203..1398 CDD:295372 68/191 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D332603at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46684
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.920

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