DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP100F and abr

DIOPT Version :9

Sequence 1:NP_001163786.1 Gene:RhoGAP100F / 43758 FlyBaseID:FBgn0039883 Length:1866 Species:Drosophila melanogaster
Sequence 2:NP_001355623.1 Gene:abr / 565190 ZFINID:ZDB-GENE-070705-146 Length:1061 Species:Danio rerio


Alignment Length:1085 Identity:251/1085 - (23%)
Similarity:383/1085 - (35%) Gaps:300/1085 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 RVGDEILAVNLVDVTHMSLDDVVIIMSIPRRLVLAIRQRRGNRGTGSPGP----PTLSRPEQKPP 284
            |.|||..|.:|:..:.....    |::.||:....:::       .||.|    ....:|..:|.
Zfish    91 RGGDEPFARDLLQGSKTGKP----ILAPPRKKPEVLQE-------NSPAPDIPESVAEQPNNEPD 144

  Fly   285 PVVVIKRDLRDEDLDET-----------------DRMPRPRSSRDRRTGDGREMTESRSRLGLG- 331
            .    .|:..||:|::.                 .|.||.|.|||..:.|||.....|...|.| 
Zfish   145 S----DREFEDEELNQNFVQKNLLVPKGNVRESHRRNPRVRISRDMDSDDGRFSPYLRGSHGSGR 205

  Fly   332 ------LNNYSPQSEQLDMYYNTRG-GGGGAMGEPPNWGYKPPPPPSSVITEQPTKAHAFAPSHA 389
                  |::....|...|..|||.| .|..|.......|.:..|    .|.|.||    .:|   
Zfish   206 STPDGYLSSDHDDSSSADFNYNTDGYEGDPAEDRKSQDGSETMP----FIDESPT----MSP--- 259

  Fly   390 YYQNAGTLESLAEKVHAFYPGQPGG--PPVGPSRRMSTGTGNVGLAQQHARFPRSGSDQHLPRVE 452
                           |....||.|.  .|..|...:|.|....||..:  :...||   .|...|
Zfish   260 ---------------HLCARGQDGEAVSPTPPEGLLSGGDIEKGLEMK--KLVLSG---FLASEE 304

  Fly   453 YSDYSNSLGRHSLLRSSLKPGTTGGAPM------------------------------------Q 481
            .  |.|.|....|....||...|...|:                                    :
Zfish   305 I--YINQLEALLLPMKPLKATATTSKPVLTVEQIDTIFFMIQDIFEIHKEFYDALSPHIQQWDEK 367

  Fly   482 VGVG-------GTLGRYGRYDQQRAGVSKYGPPSGGAQSLTRRSRPNLDYS--SDTEATIGPRPS 537
            |.||       ..||.|      :|.|..|....|   .:.:.|:.|:.:.  |:.....||:.|
Zfish   368 VTVGHLFQKLASKLGVY------KAFVDNYKLAVG---MVEKCSQANIQFQKISENLKVKGPKES 423

  Fly   538 YYYYNRPAIGSMSRGSGGAGGGVGAASTAALLAGAADLNKFNSL---------PRERPGTRLQGI 593
                               ......|:..|||....|....::|         |::.|...|   
Zfish   424 -------------------KDCTATATMEALLYKPIDRVTRSTLVLHDLLKHTPKDHPDFPL--- 466

  Fly   594 RSRMGDRL-VDENDGNTSAPEFDVRRGRDLRQRITASPSIFTADEYRAWLRRAPSSSAIAEQMRM 657
               :.|.| :.:|..::...|.|.||           .::.|.......|.:......::|..|.
Zfish   467 ---LQDALRISQNFLSSINEEIDPRR-----------TAVTTPKGEARQLVKDGFLVEVSEGTRK 517

  Fly   658 TRDMF--------------AQPRAQRFSCS-----AENIHDALRNTESIYSSRNHILGTGTLDRN 703
            .|.:|              |..|.|::.|.     |:.....|..::|:    .|:   .||..:
Zfish   518 LRHVFLFTDLLLCAKMKKTAVGRHQQYECKWYIPLADLSFQTLDESDSL----PHV---QTLAEH 575

  Fly   704 MGLTRPISALPVRSMSSQHIGGAGSIRSPSIRRMRQLLE------LSAGPASP------SGS--- 753
            ......|....::| ..|....|...:|.::.|:|:.:.      |...|..|      .|.   
Zfish   576 EIEEMKIKISSIKS-EIQKEKKAQKGQSRNVDRLRKKMNEQESCLLLNSPTIPFRIHNKHGKSYL 639

  Fly   754 -ILSTGGHQSPAPTPSATLPRPHRQ------IDINPAEFAKYKL----------DKPIVDIGGIS 801
             :||:...:|........|.:...|      :::.....:.:||          :|...:..|:.
Zfish   640 FLLSSDYERSEWRESIQKLQKKDLQACVLSSVELQVLTGSCFKLRTVHNIPVTSNKDDEESPGLY 704

  Fly   802 GMLWIHLLAGRGLRTAPEGAAGTATQGQTRDLYCVIECDR----VHKARTVVRSGDLQFDWDESF 862
            |.|.:.:....|.:             ::.:|||.:|.|.    |.||:|.|.....:..|:|.|
Zfish   705 GFLHVIVHKATGFK-------------ESANLYCTLEVDSFGYFVSKAKTRVFRDTTEPQWNEEF 756

  Fly   863 ELDLVGNKQLDVLVYSW----------DPQHRHKLCYRGAISLSSILRQSP------LHQLALKV 911
            |::|.|::.|.:|.|..          |.:...|:..:|.:.|.....||.      :....:||
Zfish   757 EIELEGSQCLRILCYEKCYDKSKLNKDDNEIVDKIMGKGQVQLDPQTVQSKNWHMDVIEMNGIKV 821

  Fly   912 EPRGTIYIRMRHTDPLALYKRRGLPSLRAGYPTLFGADLETVVNRESKNAPGSAPVPIVLRRCVE 976
            |      ..|:.|......||  .||.:..  .:||..:..|..||      .:.||.::|:|:|
Zfish   822 E------FSMKFTSRDLSLKR--TPSKKQS--GVFGVKISVVTKRE------RSKVPYIVRQCIE 870

  Fly   977 EVERRGLDIIGLYRLCGSATKKRLLREAFERNSRAVELTPEHVPDINVITGVLKDYLRELPEPLF 1041
            |||:||:|.:|:||:.|.||..:.|:.||:.|::.:.:....: |||.|.|.||.|.|||||||.
Zfish   871 EVEKRGIDEVGIYRISGVATDIQALKAAFDANTKDILMMLSDM-DINAIAGTLKLYFRELPEPLL 934

  Fly  1042 TRCLFQMTVDALAVCLPDDPEGNAKLMLSILDCLPRANRATLVFLLDHLSLVVSNSERNKMSAQA 1106
            |..|:...::.:::   .||......|:.:|..||..|..|.:.||:||..|......||||...
Zfish   935 TDRLYPAFMEGISL---SDPAAKENCMMHLLRSLPDPNLITFLTLLEHLKRVAEKEPINKMSLHN 996

  Fly  1107 LATVMGPPLMLHSASAQPGADI---------DHAQPIAVLKYLLQ 1142
            ||||.||.|:..|.|....|.|         |....:.||.|.||
Zfish   997 LATVFGPTLLRPSESESSKAQITLASDIWSHDVMAQVQVLLYYLQ 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP100FNP_001163786.1 PDZ_signaling 177..260 CDD:238492 9/35 (26%)
C2 804..905 CDD:175973 27/120 (23%)
RhoGAP_SYD1 946..1144 CDD:239844 77/206 (37%)
abrNP_001355623.1 Bcr-Abl_Oligo 3..74 CDD:312543
RhoGEF 295..483 CDD:214619 40/226 (18%)
PH-like 477..661 CDD:354315 35/202 (17%)
C2_ABR 707..827 CDD:176068 31/138 (22%)
RhoGAP_Bcr 846..1042 CDD:239852 77/206 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D332603at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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