DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP100F and syde2

DIOPT Version :9

Sequence 1:NP_001163786.1 Gene:RhoGAP100F / 43758 FlyBaseID:FBgn0039883 Length:1866 Species:Drosophila melanogaster
Sequence 2:XP_002931720.3 Gene:syde2 / 100494956 XenbaseID:XB-GENE-980337 Length:1547 Species:Xenopus tropicalis


Alignment Length:1458 Identity:331/1458 - (22%)
Similarity:524/1458 - (35%) Gaps:447/1458 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LCCGRRKENGRSVP-DVTASPGRAPPGPLPANQMPAMGNQQHHGNQQHHGN------------QQ 74
            :|.|....:.||.. :.|.||           |....|.||..|.    ||            |:
 Frog   299 ICIGHDGLSPRSEQLNRTVSP-----------QGDYSGYQQSKGT----GNIYLETDRLRSQLQE 348

  Fly    75 QHHGNQHSNH----RGQSGSLS-------NAAGVKDPVMLQGDFRKVSGISSEIFRQIEAVENDH 128
            .::...|:.|    ..|:..::       :::..:|.|..|...|   .|.|:::...||.....
 Frog   349 AYYLLIHAMHDLPLENQTSKIAAKVERCPSSSQSQDSVYSQSSVR---AIESDVWSSDEASPKQV 410

  Fly   129 DPNTAAALEAVERRGEMIVRVLEPRCMGSKQAVDAAHKLMNKADARHTVQLVEIVKR-------P 186
            ..:...:|.|        :|.||         ::..|......||.:|:.:.|.:::       .
 Frog   411 SQSDLVSLNA--------LRNLE---------INRFHSCSKSLDAIYTMPIQETLQKFHSDSLIK 458

  Fly   187 GQTLGLYIREGNGADRTDGVFISRI-----------------ALESAVYNSG-CLRVGDEILAVN 233
            ..||...:....|.:.:.|....:.                 |:.|.:  || |.:...:.|...
 Frog   459 YSTLTSSVSPNCGIEDSQGSVCHQADTYMDCKGDVCPQSTTRAISSEI--SGVCNQTQSDYLHEG 521

  Fly   234 LVDVTHMSLDDVV------IIMSIP---------------RRLVLAIRQR---RGNRGTGS---P 271
            .....|::.:.|.      ::...|               |.|.|.::.|   ...|.|||   .
 Frog   522 KPVYEHVTCNTVTADSQGQVLSQKPSGLTVKKMQKWMYKGRLLSLEMKDRIIGSSQRTTGSCRLT 586

  Fly   272 GPPTLSRP---------------EQKPPPV----------VVIKRDLRDEDLDETD------RMP 305
            ...|..||               |.:.|||          .|::::|:..:.:|.:      .:.
 Frog   587 SSGTSDRPELPQTSSSASLKMPGESQGPPVTDLIENVYASTVVRKELKVIEANEHNLQKNRITVS 651

  Fly   306 RPRS----------SRDRRTGDGREMTESRSRLGLGLNNYSPQSEQLDMYYNTRGGGGGAMGEPP 360
            :.||          .|:...|..|....::.:     |:||.:.:|.....:...........|.
 Frog   652 KKRSWLIQSSHKYQQREENNGPKRPPDSNQIQ-----NSYSFRLKQQQTLVSVEKNSCNRTQVPC 711

  Fly   361 NWGYKPPPP-----PSSVITEQPTKAHAFAPSHAYYQNAGTLESLAEKVHAFYPGQPGGPPVGPS 420
            |...:|.|.     |:|| |:......|......:|...                     |....
 Frog   712 NEVVQPTPANPLVLPNSV-TDHNEDNDADDEGEIWYNPI---------------------PEDDD 754

  Fly   421 RRMSTGTGNVGLAQQHARFPRSGSDQHLPRVEYSDYSNSLGRHSLLRSSLKPGTTGGAPMQ-VGV 484
            :.:||...:..:|..      ||||                   ||::|   |:.||.|.. |.|
 Frog   755 QYLSTDKTSCQIATV------SGSD-------------------LLKTS---GSPGGLPRSAVCV 791

  Fly   485 GGTLGRYGRYDQQRAGVSKYGPPS--GGAQSL------TRRSRPNL----DYSSDTEATIGPRPS 537
            |..:              :..|.|  ..|.:|      |:..:.||    ..:...|.|..|:  
 Frog   792 GDMM--------------QMSPTSEINHADALHSNDYCTQLHKQNLTSKAQMAPSEEVTPAPK-- 840

  Fly   538 YYYYNRPAIGSMSRGSGGAGGGVGA-----ASTAALLAGAADLNKFNSLPRERPGTRLQGIRSRM 597
                           |..:|.||.:     :.||         .:|:......|..|...|....
 Frog   841 ---------------SNESGAGVQSPIKPISPTA---------TEFSPPSSPNPSKRAGSINWSF 881

  Fly   598 GDRLVDENDGNTSAPEFDVRRGRDLRQRITASPSIFTADEYRAWLRRAPSSSAIAEQMRMTRDMF 662
            .|::        .:|    |..|.|..::...|.:..        :|:...::.|:...      
 Frog   882 PDKI--------KSP----RTVRKLSMKMKKLPELSR--------KRSIKGTSNADHAP------ 920

  Fly   663 AQPRAQRFSCSAENIHDALRNTESIYSSRNHILGTGTLDRNMGLTRPISALPVRSMSSQHIGGAG 727
                    |.|..|..| :.:|.|:.||.|   .|....||: ::|......|.|..:.....:|
 Frog   921 --------SVSKSNCQD-ISHTASLSSSGN---ATAAASRNV-ISRYHLDSSVSSQQNYKKKNSG 972

  Fly   728 SIRSPSIRRMRQLLELSAGPASPSGSILSTG------------GHQSPAPTPSATLPRPHRQIDI 780
            |.:|                 |..|..||.|            |..:.|......|...:.:.||
 Frog   973 SSKS-----------------SSKGGYLSDGDSPELIAKSGKHGADNRATKGKEALAGSNTKSDI 1020

  Fly   781 NPAEFAKYKLDKPIVDIGGISGMLWIHLLAGRGLRTAPEGAAGTATQGQTRDLYCVIECDRVHKA 845
            :...|..|...........|||::.:|......|:         ..:..::|::|.|:.|.|:||
 Frog  1021 DIDAFRHYSFSDQPKCFQYISGLMSLHFYGAEDLK---------PPKIDSKDVFCAIQVDSVNKA 1076

  Fly   846 RTVVRSGDLQF-DWDESFELDLVGNKQLDVLVYSWDPQHR-HKLCYRGAISLSSILRQSPLHQLA 908
            ||.:.:....| |.|.:|.::|...:.|.::|:||||..| :::|..|.:.|.::.|.:..||||
 Frog  1077 RTALLTCRTTFLDMDHTFNIELENAQHLKLVVFSWDPTPRKNRVCCHGTVVLPALFRVTKTHQLA 1141

  Fly   909 LKVEPRGTIYIRMRHTDPLALYKRRGLPSLRAGY---PTLFGADLETVVNRESKNAPGSAPVPIV 970
            :|:||||.||::      |.|.::......|.|.   |.:||.:...||.:|:    ....||::
 Frog  1142 VKLEPRGLIYVK------LNLMEQWENSLDRPGVDREPIVFGVEARKVVEKEN----AGLMVPLL 1196

  Fly   971 LRRCVEEVERRGLDIIGLYRLCGSATKKRLLREAFERNSRAVELTPEHVPDINVITGVLKDYLRE 1035
            :.:|:.|:|:||..::|||||||||..|:.|||||||:|::|.|.....||||||||||||||||
 Frog  1197 MDKCITEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKSVGLCESQYPDINVITGVLKDYLRE 1261

  Fly  1036 LPEPLFTRCLFQMTVDALAV---------CLPD--DPEGNAKLMLSILDCLPRANRATLVFLLDH 1089
            ||.||.|:.|::..:.|:|.         |..|  |.|..    :|:|||||...:|||..||||
 Frog  1262 LPSPLITKHLYEAVLKAMAEKPLKMASSGCENDSRDSENT----VSLLDCLPDVEKATLKMLLDH 1322

  Fly  1090 LSLVVSNSERNKMSAQALATVMGPPLM------------LHSASAQPGADIDHAQPIAVLKYLLQ 1142
            |.||.|..|.|||:.|.||...||.|:            :...|.:..:.:|..:.|.||.||||
 Frog  1323 LKLVASYHEVNKMTCQNLAVCFGPVLLSQRQETSSHNNRVFIDSEELASALDFKKHIEVLHYLLQ 1387

  Fly  1143 IWP------------------QPQAQHQQMAQHMGGAAGAMMGGL-------VTAGSMSNMAGVA 1182
            :||                  ||..:.::....|.....:.|.|:       :.:.|.:..||..
 Frog  1388 LWPVKNASAKEPAPNSTLTEQQPCLRRKKPRPQMLNLGSSDMSGVLRPRVTRLDSPSSNRYAGDW 1452

  Fly  1183 SGRR-----------------GESTGQRGSKVSALPAD--RQQLLLQQQAQLMAAG--------- 1219
            |..|                 .|.|..||..|.:...|  .||:..:...:...:.         
 Frog  1453 SSCRESYLICPKDEADYDDVPSEDTDSRGDIVRSQLDDVGYQQVTKEHPLKAFVSSEGDGTEEQE 1517

  Fly  1220 -NLLRSSTSVTNILSQGHPQLSATANNH 1246
             ||.....|:..::  |:.:|....|.|
 Frog  1518 VNLQDLQESIDTLI--GNLELELKKNKH 1543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP100FNP_001163786.1 PDZ_signaling 177..260 CDD:238492 17/128 (13%)
C2 804..905 CDD:175973 27/102 (26%)
RhoGAP_SYD1 946..1144 CDD:239844 96/220 (44%)
syde2XP_002931720.3 C2 1041..1156 CDD:417471 41/129 (32%)
RhoGAP 1176..1390 CDD:413382 96/221 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 150 1.000 Domainoid score I4370
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004214
OrthoInspector 1 1.000 - - oto103072
Panther 1 1.100 - - O PTHR46150
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2831
SonicParanoid 1 1.000 - - X2962
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.040

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