DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rift and rft-2

DIOPT Version :9

Sequence 1:NP_651901.3 Gene:Rift / 43756 FlyBaseID:FBgn0039882 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001256041.1 Gene:rft-2 / 178842 WormBaseID:WBGene00021626 Length:476 Species:Caenorhabditis elegans


Alignment Length:486 Identity:132/486 - (27%)
Similarity:223/486 - (45%) Gaps:105/486 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 VLAIFFGIGTWLGVNGTFIQLPLLVDEAPEGWSLPSYLSVMVQIGNLGPLLYTAIQKYSPKKLND 142
            :|...||..:|:|.|..::|||||..|.||.|:|||||:.:|||..:.||:||.:.|        
 Worm     9 ILVALFGSSSWMGTNSVWMQLPLLTSELPEQWNLPSYLAGVVQIACIVPLIYTILHK-------- 65

  Fly   143 GWTIHGV---------LLVGAIS----CLL-TAFFYNQTASVAGTDHSLALFLLTCFTALNACTS 193
                 ||         |::..:|    |.| .:||::..:.:.|...|..|:.|....|:....|
 Worm    66 -----GVKSFTIPTAPLIIALLSLACCCQLGLSFFWSDYSEIFGAPRSWPLYSLLFGLAIVNAMS 125

  Fly   194 SVLFMPYMGRFKEQYMVTYFIGEGLSGLLPSVTALIQGIGESGDCVLVNVTESGEEVYALRKTPP 258
            :|||||:|.:|...|:..||:|.|||.|.||:.:|.||..      :....|.|    ...:.||
 Worm   126 NVLFMPFMAQFHPAYLNAYFVGMGLSSLAPSLLSLAQGTS------MFKCDEKG----VAERFPP 180

  Fly   259 RFDTRVFFLILFALMVLAYVGY------------------------------------------- 280
            .|...:||.::|:...:|...:                                           
 Worm   181 NFSVSIFFFVIFSFTCVALFAFIALYRSGAHTHFATPNKKEPNEGTPLKKDLNNTSSSRKGDDED 245

  Fly   281 ---------------ALLNSLPLARREYAQVTVSEGNKYVYGEA----DNQP-KAEKLSKGQYTY 325
                           |:::.|.:..||..|.:..:.| |:...|    |::| ..:.::..::|:
 Worm   246 ESPIEIHETGAPAIDAIVSELDVTFREELQKSFRDAN-YLERSAMINDDSEPHPVDYITGVKFTF 309

  Fly   326 LLLLIGAISLFSNGMFGSIQSYSSAPYGSQAYHLAATLSVIANPVACFMAMFLHFTSLRIITVLS 390
            ||.....::...||:..|:|||::.||....||.|.|||.:.:|::.|:..|:...|:.::.:|:
 Worm   310 LLFTTALVNAQMNGIITSVQSYAALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAILT 374

  Fly   391 ILAGLLTSYVFTTAALSPLPPLHDQTVGAVLVVTAWTLLVGIVSYTKLGITTVMRAQGGQS---L 452
            ..:..:|:::...|||||....:..|:|:.|.:....:..|:.||.::...:::| :|.||   |
 Worm   375 ACSTAMTAFIVYLAALSPNLIFNSVTIGSALSIGGSLIAAGLHSYLRVVFASLLR-EGHQSESRL 438

  Fly   453 VWVGAITQLGSAIGAVAIFFAINYSDLFQAA 483
            .|.|...|:||.||:..:|..:|.:.||.:|
 Worm   439 FWCGVFIQIGSFIGSAVMFPLVNIAHLFTSA 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RiftNP_651901.3 DUF1011 320..418 CDD:283816 29/97 (30%)
rft-2NP_001256041.1 DUF1011 306..402 CDD:310675 29/95 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160474
Domainoid 1 1.000 124 1.000 Domainoid score I3412
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12324
Inparanoid 1 1.050 207 1.000 Inparanoid score I2407
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52392
OrthoDB 1 1.010 - - D356719at33208
OrthoFinder 1 1.000 - - FOG0004349
OrthoInspector 1 1.000 - - otm14621
orthoMCL 1 0.900 - - OOG6_105349
Panther 1 1.100 - - LDO PTHR12929
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3974
SonicParanoid 1 1.000 - - X1135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

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