DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42233 and AT4G38480

DIOPT Version :9

Sequence 1:NP_651899.2 Gene:CG42233 / 43754 FlyBaseID:FBgn0250755 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_568042.1 Gene:AT4G38480 / 830004 AraportID:AT4G38480 Length:471 Species:Arabidopsis thaliana


Alignment Length:494 Identity:129/494 - (26%)
Similarity:198/494 - (40%) Gaps:104/494 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GHLPSAIFRERLSAAQNLYQR-----NLTGHYGCVNALEFSSGGQFLASGGDDKRVLLWNIDREL 129
            |.||:..|..|.||:::|.:|     .|..|.||||.:.|::.|..|.||.||::|:||:.....
plant    24 GLLPNRSFSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSFNADGDILLSGSDDRQVILWDWQTAS 88

  Fly   130 VSKLGKPRSMNEKHASNIF---CLGFDTQNSYIFSGGNDDLVIQHDLETGKILNHF--SHDGPVY 189
            | ||    |.:..|.:|||   .:.|....:.:.|..:..:.....||:|::....  .|.|||:
plant    89 V-KL----SFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQVRYSKILESGQVETSLLGKHQGPVH 148

  Fly   190 GLSVDRISGHLLSVATEHGEILVYDLRAGKSEPLAIAKFKTPFN------AVEFHPLNGNFLATA 248
            .|:|:..|........|.|.:..:|||...:..|...| :..||      |:...|.|...||.|
plant   149 KLAVEPGSPFSFYTCGEDGAVKHFDLRTRVATNLFTCK-EAKFNLVVYLHAIAVDPRNPGLLAVA 212

  Fly   249 NAKRGAMLWDLRHHQQALCQYNYI-PESPSC------------MSVRFNCNGTL----------L 290
            .....|.::|:|.::.. ..||:. |....|            ..:.|:....|          |
plant   213 GMDEYARVYDIRSYRSE-GWYNFTQPIDHFCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYL 276

  Fly   291 LTLHRRLPPILY--SPGAPEPVATFYHDEYFNSCTMKSCTFAGPQDELVVSGSDNFNMFIWR--- 350
            .|....|.|..|  |....|.:....:.|:.|..|:|...|.||:.|.||||||...:||||   
plant   277 FTPDMGLGPTPYPSSTKTEERMTPQVYKEHTNRETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKD 341

  Fly   351 ---LEGVDLDEKNQWMETTPVILAGHRSIVNQVRYNRERCLLASSGVEKIIKLWSPFAQQGWE-- 410
               |..::.|                |.:||.:..:....|:.|||::..||:|:|   .|.|  
plant   342 GELLRAMEAD----------------RHVVNCIESHPHMPLMCSSGIDTDIKIWTP---GGTEKP 387

  Fly   411 ---GSLTQAEAL--PYCTRALYRESSDHVSQDFSARSTDEDQVMLAFFDTLVQH---ELESWSTV 467
               |:..||...  |......|.:..|....:.|..|:|:|       |:..:.   |::...|.
plant   388 LSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDD-------DSSEEEENGEVDVEITK 445

  Fly   468 DNQNSSKSSTHTSTCSEASSPTEEPSDEEDQDPQTDRNQ 506
            |:.|....              ::..|:||.|...|.::
plant   446 DDDNDHGD--------------DDDDDDEDDDGDGDGDE 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42233NP_651899.2 WD40 <45..404 CDD:225201 106/380 (28%)
WD40 repeat 56..91 CDD:293791 9/25 (36%)
WD40 90..402 CDD:295369 97/358 (27%)
WD40 repeat 100..142 CDD:293791 15/41 (37%)
WD40 repeat 147..183 CDD:293791 7/40 (18%)
WD40 repeat 191..225 CDD:293791 9/33 (27%)
WD40 repeat 232..270 CDD:293791 11/43 (26%)
WD40 repeat 278..371 CDD:293791 30/122 (25%)
WD40 repeat 377..401 CDD:293791 8/23 (35%)
AT4G38480NP_568042.1 WD40 <1..95 CDD:225201 29/75 (39%)
WD40 51..379 CDD:392136 96/350 (27%)
WD40 repeat 60..96 CDD:293791 14/40 (35%)
WD40 repeat 102..141 CDD:293791 6/38 (16%)
WD40 repeat 147..186 CDD:293791 10/38 (26%)
WD40 repeat 194..247 CDD:293791 13/53 (25%)
WD40 repeat 254..304 CDD:293791 9/49 (18%)
WD40 repeat 355..379 CDD:293791 8/23 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270484at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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