DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42233 and CG8001

DIOPT Version :9

Sequence 1:NP_651899.2 Gene:CG42233 / 43754 FlyBaseID:FBgn0250755 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_001261283.1 Gene:CG8001 / 38224 FlyBaseID:FBgn0035268 Length:748 Species:Drosophila melanogaster


Alignment Length:543 Identity:126/543 - (23%)
Similarity:210/543 - (38%) Gaps:149/543 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 TRNLDVALSQRENILV------AGHLPSAIFRERLSAAQNLYQR-----NLTGHYGCVNALEFSS 106
            |.|.|..|.|||:.::      .||..::.|.:....::.:.::     :|..|:||||:|.|:.
  Fly   272 TWNYDQELLQREHNIINRIDWRGGHTSASSFGQGYYGSRQVVEQMTLLSSLNVHHGCVNSLNFNR 336

  Fly   107 GGQFLASGGDDKRVLLWNIDRELVSKLGKPRSMNEKHASNIFCLGFDTQNSYIFSGGNDDLVIQH 171
            .|..:.||.||..:::|:..:|  .:|.:.||   .|..|||      |..:|.|.|..|:|  .
  Fly   337 AGDLICSGSDDLTIVVWDWAKE--KQLHRFRS---GHNMNIF------QTKFIDSAGCLDIV--S 388

  Fly   172 DLETGKI--------------LNHFSHDGPVYGLSVDRISGHLLSVATEHGEILVYDLRAGKSEP 222
            ....|::              :..::|...|:.:.|...|.|.|..|.|...:..:||||..:  
  Fly   389 SSRDGQVRRSVIPPSGGVIKPIRLYTHSESVHKIIVVPHSRHELMSAGEDAAVKHFDLRASNA-- 451

  Fly   223 LAIAKFKTPFNAVEFHPLNGNFLATANAKRGAMLWDLRHHQQALCQYNYIPESPSCMS-----VR 282
             |....:..:|             ..|.:....|:.:.||.       |.||  .|:|     :|
  Fly   452 -ATTMMRCVYN-------------DENERGRVRLFSIAHHP-------YAPE--FCVSGSDDILR 493

  Fly   283 FNCNGTLLLTLHRRLPPIL------------YSPGAPEPVATFYHDE------------------ 317
            ......|...:|:..|..|            |:....|.:|: |.|.                  
  Fly   494 VYDKRNLAKAIHQMAPRNLLEAQITQITCAVYNHSGSEILAS-YSDAGIYLFDSRNYNRGDYLHC 557

  Fly   318 ---YFNSCTMKSCTFAGPQDELVVSGSDNFNMFIWRLEGVDLDEKNQWMETTPVIL----AGHRS 375
               :.||.|:|...|.||:.|.:|||||..|:|.|        :||     |..|:    ..|..
  Fly   558 YKGHINSRTIKGVNFFGPRSEYIVSGSDCGNIFFW--------DKN-----TEAIINYMKGDHVG 609

  Fly   376 IVNQVRYNRERCLLASSGVEKIIKLWSPFAQQGWEGSLTQAEALPYCTRALYRESSDHVSQDFSA 440
            :||.:..:....:||:||:|..:|:|:|   ||.|..|.:         .|.:::   :.::|..
  Fly   610 VVNCLEPHPWMPVLATSGLEHDVKIWTP---QGPERKLPE---------DLLKQT---LQRNFRC 659

  Fly   441 RSTDEDQVMLAFFDTLVQHELES----------WSTVDNQNSSKSSTHTSTCSEASSPTEEPSDE 495
            ...:...:.:..|...::..|:.          .|::.:|....||:. |..|.||:||....:.
  Fly   660 NIVESIDLDINNFQYFIRGFLQGSGASHLRQRHTSSLGHQMRDNSSSR-SNGSNASNPTSHRRNS 723

  Fly   496 EDQDPQTDRNQNEENVQDQDIDT 518
            ...|...|...:    .|..:||
  Fly   724 NSSDDTNDEGAD----ADAALDT 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42233NP_651899.2 WD40 <45..404 CDD:225201 102/417 (24%)
WD40 repeat 56..91 CDD:293791 8/45 (18%)
WD40 90..402 CDD:295369 91/372 (24%)
WD40 repeat 100..142 CDD:293791 13/41 (32%)
WD40 repeat 147..183 CDD:293791 9/49 (18%)
WD40 repeat 191..225 CDD:293791 10/33 (30%)
WD40 repeat 232..270 CDD:293791 5/37 (14%)
WD40 repeat 278..371 CDD:293791 32/134 (24%)
WD40 repeat 377..401 CDD:293791 8/23 (35%)
CG8001NP_001261283.1 WD40 <317..653 CDD:225201 98/402 (24%)
WD40 318..635 CDD:295369 91/368 (25%)
WD40 repeat 331..367 CDD:293791 12/40 (30%)
WD40 repeat 373..414 CDD:293791 8/48 (17%)
WD40 repeat 419..462 CDD:293791 13/58 (22%)
WD40 repeat 472..513 CDD:293791 11/49 (22%)
WD40 repeat 520..559 CDD:293791 5/39 (13%)
WD40 repeat 567..594 CDD:293791 13/34 (38%)
WD40 repeat 611..657 CDD:293791 15/60 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45448287
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270484at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR15574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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