DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Acf and Pbrm1

DIOPT Version :9

Sequence 1:NP_536734.2 Gene:Acf / 43751 FlyBaseID:FBgn0027620 Length:1476 Species:Drosophila melanogaster
Sequence 2:NP_001074720.1 Gene:Pbrm1 / 66923 MGIID:1923998 Length:1704 Species:Mus musculus


Alignment Length:795 Identity:161/795 - (20%)
Similarity:276/795 - (34%) Gaps:210/795 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   777 YIYKAEEIDELIKALNPNGLREYELLQELSVLRSLIEQHAK------------TCPV-DL-LSLE 827
            |...::.|| |:|......:.||:.:..|:....|:..:||            .|.: || |...
Mouse    85 YEVVSQPID-LMKIQQKLKMEEYDDVNLLTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLRTR 148

  Fly   828 NETMRKKFMAAMESETNRKYGEANFG-LPNGTD---LNEVMRLHLVDRIIQFENDIYTGDLGRLK 888
            ||.::|   ...:.|.:.:.|:.|.| |.:|:.   |.|::. .|::.|:     :.|...|||.
Mouse   149 NEFVQK---GEADDEDDDEDGQDNQGTLADGSSPGYLKEILE-QLLEAIV-----VATNPSGRLI 204

  Fly   889 VKDMEKWRSDLLGGNYDAQCKLQWGP------GGKLEDEAGSDNESHETHEEDDGALLGKYARKP 947
            .:..:|..|.:...:|.|..|   .|      ..::::  ||....|...::.|  ||.|.| |.
Mouse   205 SELFQKLPSKVQYPDYYAIIK---EPIDLKTIAQRIQN--GSYKSIHAMAKDID--LLAKNA-KT 261

  Fly   948 YRDPGMYLAASADT-KPLPDSDDEEDQHTNAVSIPIAVH---NMASALL---------------- 992
            |.:||..:...|:: |.:......|.:|.......:.:.   |:|:|.|                
Mouse   262 YNEPGSQVFKDANSIKKIFYMKKAEIEHHEMTKSSLRIRTASNLAAARLTGPSHNKSSLGEERNP 326

  Fly   993 -----QVEQAI-GKRFLKEPYGMKKWDPKQEALKLACDSRLHQWEVSLMESTSFAQVFLHLNILH 1051
                 :.::|: |.|.......::.....:|...||. :|..:.|......|||..|....:.|:
Mouse   327 TSKYYRNKRAVQGGRLSAITMALQYGSESEEDAALAA-ARYEEGESEAESITSFMDVSNPFHQLY 390

  Fly  1052 DCIQWRRSTNKSLCKVCRRGSD----------PEKMLLCD---ECNAGTHMFCLKPKLRSVPPGN 1103
            |.:           :.||....          |.|....|   :......:..::.||::.....
Mouse   391 DTV-----------RSCRNHQGQLIAEPFFHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYET 444

  Fly  1104 WYCNDCVKSLGLSNGQNEKDKKQATKK---KRKFIVEEEDDEATDEEEEEKKDDDMTDEDAEHEN 1165
            ....:|..:|...|.:.......|..|   |.:.:::.:..|....::.|..|..::...::..:
Mouse   445 LDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDTGS 509

  Fly  1166 EKHDEDVEDDESVTSTPSSSRVNGR---------ILRRPRTRPTSRRLTS--------------- 1206
            .|...:..|.|.:.....||:.|.|         ::...|...:.|||..               
Mouse   510 AKRKRNTHDSEMLGLRRLSSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYY 574

  Fly  1207 ---------KEIEEHAQEDVDSGD--VSDDASL---------TAGEDTIEDESDEEKVCQKCFYD 1251
                     |.||.:.:.|..:|:  :.:|..|         ..|.....|....||:.:.    
Mouse   575 KIILEPMDLKIIEHNIRNDKYAGEEGMMEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKD---- 635

  Fly  1252 GGEIKCVQCRLFFHLECVHLKRPPRTDFVCKTCKPMPQRPRRRHSNMNGDHDRDEEEPKAKRPRN 1316
                                ||        |...|:|.             |.|...||.|..|.
Mouse   636 --------------------KR--------KELGPLPD-------------DDDMASPKLKLSRK 659

  Fly  1317 SLRLSIDKTARPSNGNNNNNNNNSSVNNNNHRRSGRRTNEHMPLNSAALYDLLEQIMKHKAAWPF 1381
            | .:|..|:...:......|....:|.|...:| |||               |..|        |
Mouse   660 S-GVSPKKSKYMTPMQQKLNEVYEAVKNYTDKR-GRR---------------LSAI--------F 699

  Fly  1382 LRPVLTSEVPDYHQIIKTPMDLAKIKSKLNMGAYQLNEELLSDIQLVFRNCDLYNVEGNEIYDAG 1446
            ||....||:|||:..||.|||:.||:|.:....||..:.::.|..::|.|...||...:.||...
Mouse   700 LRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 764

  Fly  1447 CQLERFVIDRCRDMQ 1461
            ..|.:.:::..||::
Mouse   765 LVLHKVLLETRRDLE 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcfNP_536734.2 WAC_Acf1_DNA_bd 26..125 CDD:287503
DDT 346..411 CDD:214726
WHIM1 505..554 CDD:292246
WHIM2 637..666 CDD:292247
WHIM3 775..813 CDD:292248 9/35 (26%)
PHD_RSF1 1064..1109 CDD:277018 7/57 (12%)
PHD 1244..1284 CDD:214584 3/39 (8%)
Bromo_Acf1_like 1349..1463 CDD:99936 34/113 (30%)
Pbrm1NP_001074720.1 Bromo_polybromo_I 44..156 CDD:99954 18/74 (24%)
Bromo_polybromo_II 182..284 CDD:99948 28/115 (24%)
Bromo_polybromo_III 383..484 CDD:99951 15/111 (14%)
Bromo_polybromo_IV 534..637 CDD:99949 16/126 (13%)
Bromo_polybromo_V 673..777 CDD:99946 35/127 (28%)
Bromo_polybromo_VI 790..897 CDD:99956
BAH_polybromo 972..1089 CDD:240068
BAH_polybromo 1170..1288 CDD:240068
HMG-box 1395..1459 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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