DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Acf and E(bx)

DIOPT Version :9

Sequence 1:NP_536734.2 Gene:Acf / 43751 FlyBaseID:FBgn0027620 Length:1476 Species:Drosophila melanogaster
Sequence 2:NP_001261188.1 Gene:E(bx) / 44811 FlyBaseID:FBgn0000541 Length:2761 Species:Drosophila melanogaster


Alignment Length:1856 Identity:334/1856 - (17%)
Similarity:605/1856 - (32%) Gaps:585/1856 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 IFRDYEHYFRH-VMVINSTVWQCEATGKENLTYEEAVKSERAARK--------------KMEQFK 85
            :.:|:||...| |...:|.:.:|....:|.:| ...:|.|..|..              |:: :.
  Fly  1053 LLQDWEHARAHAVPFSDSLLTECILVDQECVT-NTKIKQEVNASSGCNTTPDSNTQDSDKID-YI 1115

  Fly    86 QSLRAPVLLVVEHAQQSAVNTLNM-------IVAKFLRKRYFIGEEVSVQAKKN--ATYTVLGVK 141
            :|:.....:.:|..:.|.|..||.       :...:.|||       :.::||:  .|..||...
  Fly  1116 ESMDVCSNVEIESTEDSIVTGLNSGNAEDVDMTPGWRRKR-------NQKSKKSYIGTKDVLDQT 1173

  Fly   142 LDKNMP------------EPL---------NGIYEDTDNLVYRLRPNKG---------------- 169
            |||::|            .|:         ...:|:.:..||.....:|                
  Fly  1174 LDKDIPLNKQNRRFPITARPVKRECVKKYERETFENGNERVYSTSSPRGRVYLLNDAAKLYEQAV 1238

  Fly   170 ----------DPS-----------------AELDLP-FRQLRRSRM--EFNLENLSMFIKSNVSR 204
                      .||                 :.|.|| |..|:.:|:  :.:........|:|...
  Fly  1239 KTEDKSTITKKPSYSRYPLISNFLTHKKKRSLLVLPRFELLKLARLGGKSSTNGFHHAAKNNTIW 1303

  Fly   205 VDGLLRPKPEAYKQYVTDPGVNFSTIFIGKMPRYSPAK----IKKP---DGKKQSTLNKYIVAGE 262
            .....||.......|.|....:.|::.:.....:|..:    |.||   |||.|.|.:..||..|
  Fly  1304 QYQCSRPLFRTCWSYRTSNATSLSSLALQLRILWSCLRWDDMIAKPPSTDGKHQVTTDTEIVTLE 1368

  Fly   263 ATAAKSKAKAKSDAKSLAEE----LERVKREKEAKLIE--LEKQK-AEK----KAQLIERVENEC 316
            ....:...:.......|..:    ||..|..:|...|.  |.|:| ||.    :.|:.|...:|.
  Fly  1369 LLKLRHSGRYGEKTSYLRRKVVIPLEMPKTVREVTSIRSGLRKRKRAESPQPTEPQITEEWVDED 1433

  Fly   317 NLLL---------QKTDDLERTDQKVLPRYRQI-------------------VTLLPEHLLGDAF 353
            .|.|         |:...|....:.|..|..:.                   |.|.|: |..|  
  Fly  1434 KLELWEIKFMGEKQEKARLSAVTRSVASRQLEASGSNGSNTSTNGALGVAGRVQLAPK-LSED-- 1495

  Fly   354 MMREFMHTYTGLLSGIEVFRQNLSFYEMTRALTAREIAGPLSDILLVLL----GTVFDLQKEEEE 414
             ::|.|.....|...:...|:.::..|:||::|  .:.|.:.....|::    ||...:|:    
  Fly  1496 -VKEKMEQQLKLQRAVHQQRKLVATGEITRSVT--PVKGQVIGSRRVIVKNPDGTTRIIQQ---- 1553

  Fly   415 ECAVTYLDR------AAQTQEPYWSMAQAAKSHLYAKRHFSFKV-----NELPLDALTLSEVL-- 466
              |||.:.|      ||....|....:.:.:|:.........::     .::.:..|...:.|  
  Fly  1554 --AVTQVSRTGGANTAAAAASPTVGGSTSTQSNPSTSTPHKVQIIRGPDGKVSVRGLNPGQQLVQ 1616

  Fly   467 ----RLHLLGSGAFVNE--KAERWRVMYRNGYSSKEDPGL---------------ELRLEHSHIL 510
                :||:|.:....|.  :..:.:|..:.. |:...|.:               ::.::|    
  Fly  1617 MPDGKLHVLTTTTSSNSAGQGNKMKVPIKPA-STSSSPAISSAQTTTNPVTPVIKQIAVKH---- 1676

  Fly   511 RILKNHSVYQL-----------KFKDIMLLI----RCLMSQIMTYSGTINLIEERMEQTAKARQD 560
             :.||.:...:           :.|:.:||.    :...|...|.|..:..|..::..|:.:.|.
  Fly  1677 -VTKNSATQSIASSSRVALPLAQIKNKLLLAQQQQQSTSSSPATSSSPVQKIVSKVVNTSTSGQT 1740

  Fly   561 LR--------ALVVGENKRLAAVEINRKKLTQMHHLEVNGVEPEKREALVEK------------- 604
            |:        .||||:|.:...|.|:.....|      .|..|.:::.||:.             
  Fly  1741 LQQVFVQSGSKLVVGQNAQGQKVIISTSAAQQ------QGTSPVQQQQLVQSQPIQQSPQQISMT 1799

  Fly   605 ------LKKSIAELHAQSDQQH------------------------RKHELQMLKLHSQLFNFLV 639
                  .:|.|.::...|:.|.                        :...|||::...|      
  Fly  1800 QVGNQPTQKVIQQIVNTSNVQQQIVVGGQRIILSPGQTIVTQRNVPQSQALQMVQQQIQ------ 1858

  Fly   640 YLGMDRCYRKYYVLESMPGIFVE-----HSPDSLDTCL----------EQPITNKSQIEI----- 684
               ..:..::::|::......|:     .|..|..|.|          :|.|..|:||..     
  Fly  1859 ---TQQQQQQHHVVQPQQQFVVQSNQIVQSSPSAQTKLVKQLVVQQQSQQTIEEKTQITTTDSNE 1920

  Fly   685 --RQQSALPKN-------RKDLRV-------YLLKLYGDDEKKTKKKAKHS--------LENKEN 725
              .||..:|.:       :..|:|       .::|..|:::.:.....||.        ..|...
  Fly  1921 TGTQQVLVPNSTLAQQLAQGKLQVATVNGQQVIVKPLGNNQAQIVAHIKHQGDGNAHIVTSNSAT 1985

  Fly   726 QEHRLNGSAEPMDVESDSP---------------EAPTHFE------------------------ 751
            ...:.|....|:..::..|               ::||:||                        
  Fly  1986 AVPQANPQTSPVKQQALPPQSPQQVVVQQQQIHQQSPTNFESGVTPITQQPVLTQAVQAPAQQQA 2050

  Fly   752 ------LLMCS--GDKRSCI---VHDSRNGQR------------QRWAYIYKAEEIDELIKALNP 793
                  ||...  |....|:   |..:.:|.|            .:...:.:.:...:|:||...
  Fly  2051 LSVEESLLQNQPPGTVIKCVTAQVLQTEHGPRIVLQGLVGNDFTAQQLQLVQTQVKQQLMKAQES 2115

  Fly   794 NG-------LREYELLQELSVLRS----LIEQHAKTCPVDL---LSLENETMRKKFMAAMESETN 844
            ||       .:.|..:|..:.::|    |...|.......:   :|:....|........|.|..
  Fly  2116 NGKLGVLGPTKIYLAVQPENAVQSQPPPLTPVHQSAAHQQVGGGVSIAYTRMMNSNYFVQEIEEE 2180

  Fly   845 RKYGE-------------------------ANFGLPNGTDLNEVMRLHLVDRIIQFENDIYTGDL 884
            ..|.:                         ....||..|:.|...:.::....:::|::    ||
  Fly  2181 EDYDDEIIVVCSPPNQIVPSPPREVFEGRILRSELPCRTNNNFEDQDNIEQHRLKYESE----DL 2241

  Fly   885 GR--LKVKDMEKWRSDLLGGNYDAQCKLQWGPGGKLEDEA---GSDNESHETHEEDDGALLGKYA 944
            .|  |:..::| ..:|.|...|:|        ...::|.|   |.|.|:.:..|.::..:...  
  Fly  2242 KRCSLQTNNIE-IDADTLATTYEA--------NSTIKDIAINNGDDQENSKCAETENSNITTN-- 2295

  Fly   945 RKPYRDPGMYLAASADTKPLPDSDDEEDQHTNAVSIPIA---VHNMASALLQVEQAIGKRFLKEP 1006
                       .:.|.|..|.:. .|.|:.||...:.|:   :.|..:....|.:...::.:...
  Fly  2296 -----------ESFAGTSSLLEG-SEHDEPTNLAGLDISETDLENKQNESFVVTRGYIQKSISNA 2348

  Fly  1007 YGMKKWDPKQEALKLACDSR-------LHQWEVSLMESTSFAQVFLHLNILHDCIQWRRSTNKSL 1064
            .......|:.|. ||.|..:       .::||.....|.:           .:.:...|.|:.:.
  Fly  2349 LKQGNLSPELEE-KLVCMQKQQENANSTNEWETCSRGSVN-----------EEALTPSRQTDDTE 2401

  Fly  1065 CKVCRRGSDPEKMLLCDECNAGTHMFCLKPKLRSVPPGNWYCNDCVKSLG-LSNGQNEKDKKQAT 1128
            .|:......|..|....:.|.      :..|.||.       ||.|..|| ....|.|:.|:...
  Fly  2402 WKIRTSLRRPNAMTTSSQFNR------ILKKNRSK-------NDEVAELGEQKQSQLERHKELLK 2453

  Fly  1129 K---KKRKFIVEEEDDEATDEEEEEKKDDDMTDEDAEHENEKH---------DEDVEDDESVTST 1181
            |   :||..:              |:.......||.:.:.::|         ||..|::.|....
  Fly  2454 KNILRKRSLL--------------ERNLQSEIHEDVKTKVQRHVRPLSNASPDEQSENERSGEPN 2504

  Fly  1182 PSSSRVNGRILRRPRTRPTSRRLTSKEIEEHAQEDVDSGDVSDDASLTAGEDTIEDESDEEKVCQ 1246
            ....|...:..|....||  ::||.|:.:.:.            ...|..:||            
  Fly  2505 LDFKRTEVQNPRHGAGRP--KKLTRKKEKLYC------------ICRTPYDDT------------ 2543

  Fly  1247 KCFYDGGEIKCVQCRLFFHLECVHLKRPPR---TDFVCKTCKPMPQRPRRRHSNMNGDHD----- 1303
             .||.|    |..|..:||.:||.:.....   ::|:|..|| ..:..::.:.:....:|     
  Fly  2544 -KFYVG----CDLCSNWFHGDCVSITEEASKKLSEFICIDCK-RARETQQLYCSCRQPYDESQFY 2602

  Fly  1304 ------RDEEEPKAKRPRNSLRLSIDKTARPSNGNNNNNN--NNSSVNNNNHRRSGRRTNEHMPL 1360
                  :|....:......|....||:...|.....|:.|  |...:.:|:...           
  Fly  2603 ICCDKCQDWFHGRCVGILQSEAEFIDEYVCPECQRKNDANAANMKKLTSNDVEE----------- 2656

  Fly  1361 NSAALYDLLEQIMKHKAAWPFLRPVLTSEVPDYHQIIKTPMDLAKIKSKLNMGAYQLNEELLSDI 1425
                |.:|::|:..||:||||:.||...|.|||:::||.||||.:::.||....|....|.:.|:
  Fly  2657 ----LKNLIKQMQLHKSAWPFMEPVDPKEAPDYYKVIKEPMDLKRMEIKLESNTYTKLSEFIGDM 2717

  Fly  1426 QLVFRNCDLYNVEGNEIYDAGCQLERFVIDRCRDMQ 1461
            ..:|.||..||.:.:..|.....||.:.:.:.::.:
  Fly  2718 TKIFDNCRYYNPKESSFYKCAEALESYFVQKIKNFR 2753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcfNP_536734.2 WAC_Acf1_DNA_bd 26..125 CDD:287503 22/110 (20%)
DDT 346..411 CDD:214726 15/68 (22%)
WHIM1 505..554 CDD:292246 10/63 (16%)
WHIM2 637..666 CDD:292247 3/33 (9%)
WHIM3 775..813 CDD:292248 9/48 (19%)
PHD_RSF1 1064..1109 CDD:277018 8/44 (18%)
PHD 1244..1284 CDD:214584 11/42 (26%)
Bromo_Acf1_like 1349..1463 CDD:99936 34/113 (30%)
E(bx)NP_001261188.1 DDT 190..245 CDD:280886
WHIM1 288..337 CDD:292246
PHD1_BPTF 341..383 CDD:277034
BAH 361..>438 CDD:295389
TNG2 <2423..2638 CDD:227367 51/267 (19%)
PHD_SF 2533..2579 CDD:304600 14/74 (19%)
PHD2_3_BPTF 2589..2635 CDD:277035 6/45 (13%)
Bromo_gcn5_like 2653..2752 CDD:99941 34/113 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468244
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.