DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Acf and polybromo

DIOPT Version :9

Sequence 1:NP_536734.2 Gene:Acf / 43751 FlyBaseID:FBgn0027620 Length:1476 Species:Drosophila melanogaster
Sequence 2:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster


Alignment Length:798 Identity:152/798 - (19%)
Similarity:289/798 - (36%) Gaps:235/798 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   712 TKKKAKHSLENKENQEHRLNGSAEPMDVESDSPEAPTHFELLMCSGDKRSCIVHDSRNGQRQRWA 776
            ::|:...|:.:::::        :|:.::..:||              :|.:...:....|::  
  Fly     3 SRKRRASSISSRQDE--------DPLQLDDSTPE--------------QSPVQQTTTQSARKK-- 43

  Fly   777 YIYKAEEIDELIKALNPNGLREYELLQEL--SVLRSLIEQHAKTCPVDLLSLENETMRKKFMAAM 839
                        :.|:|.     ||.|:|  |:.....|..:..|..             |:...
  Fly    44 ------------RRLDPT-----ELCQQLYDSIRNIKKEDGSMLCDT-------------FIRVP 78

  Fly   840 ESETNRKYGEANFGLPNGTDLNEVMRLHLVDRIIQFENDIYTGDLGRLKVKDMEKWRSDLLGGNY 904
            :......|.:.   :.|..||.:|.:        :.:.|.| .||..| :.|:|     ||.|| 
  Fly    79 KRRQEPSYYDV---VVNPIDLLKVQQ--------KLKTDSY-DDLDDL-MADLE-----LLIGN- 124

  Fly   905 DAQCKLQWGPGGKLEDEAGS-----------DNESHETHEEDDGALLGKYARKPYRDPGMYLAAS 958
               .|..:.||.....:|.|           ..|::...||:..|  .:.:|:..|       .:
  Fly   125 ---AKAFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRA--RRMSRQVRR-------MT 177

  Fly   959 ADTKPLPD--SDDEEDQHTNAVSIPIAVHNMASALLQVEQAIGKRFLKEPYGM---KKWDPK-QE 1017
            :.|:|..|  :|||.:|:          ..:.::::.....:|.|.:...:.:   ||..|. .:
  Fly   178 SSTEPGGDGATDDEYNQY----------EELFASVMTATDPVGDRLMHRMFQLLPSKKIYPDYYD 232

  Fly  1018 ALKLACDSRLHQWEVSLMESTSFAQVFLHLNILHDCIQWRRSTNKSLCKVCRRGSDPEKMLLCDE 1082
            .::...|.||...::.:...:|.|::                               |:.||...
  Fly   233 VIEHPIDLRLIATKIQMNAYSSLAEM-------------------------------ERDLLQMT 266

  Fly  1083 CNAGTHMFCLKPKLRSVPPGNWYCNDCVKSLGLSNGQN----EKDKKQATKKKRKF------IVE 1137
            .||     ||..:     ||:....| .|||.....|.    |..|.:..|:.:..      .::
  Fly   267 KNA-----CLFNE-----PGSQIYKD-AKSLKRIFTQRRIELEMGKGKLAKRVKSLSSAAIAALK 320

  Fly  1138 EEDDEATDEEEEEKKDDDMTDEDAEHENEKHDEDVEDDESVTSTPSSSRVNGRILRRP--RTRPT 1200
            ||.|.:.|||..:|.:..|.   |..::..:.....:...||..|    :...:.:.|  |..|.
  Fly   321 EEVDSSDDEETSKKGEGPMW---ALFDHLYNAPGTSEHPGVTGPP----LGNSLWKLPVRRFHPE 378

  Fly  1201 SRRLTSKEIE-EHAQEDVDSGDVSDDASLTAGEDTIEDESDEEKVCQKCFYDGGEIKCVQCRLFF 1264
            ...|..:.|. ......:..||.::.:.|||....:.|.:      :|.|......         
  Fly   379 YFELIKRPISMSQIHTKLKKGDYANISDLTADLYLMLDNA------KKAFPTSHRT--------- 428

  Fly  1265 HLECVHLKRPPRTDFVCKTCKPMPQRPRRRHSNMNGDHDRDE---------EEPKAKRPRNSLRL 1320
            |.:.:.:.:......|        :......|::: |.|.:|         .:|:.::|      
  Fly   429 HKDALKMLKLMNAKLV--------EESLEEGSDLD-DEDAEEMDTEVFTVSTQPEKRKP------ 478

  Fly  1321 SIDKTARPSNGNNNNNNNNSSVNNNNHRRSGRRTNEHMPLNSAALYDLLEQIMKHKAAWP----- 1380
                 .||...:|:|:|.:.:.||:|..:|.|     :.:|:|....:| .|.|:...:.     
  Fly   479 -----GRPRINSNSNSNASHTPNNSNSPKSNR-----IAINAAIKKKIL-SIQKYLVDYSLGNRR 532

  Fly  1381 ----FLRPVLTSEVPDYHQIIKTPMDLAKIKSKLNMGAYQLNEELLSDIQLVFRNCDLYNVEGNE 1441
                |:........|||:.||:.|:|:..|:..:....|...|:::||.:|:|.||..||.||:.
  Fly   533 PIEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSN 597

  Fly  1442 IYDAGCQLERFVIDRCRD 1459
            ||:....|||.:.::.::
  Fly   598 IYEDANILERALNEKLKE 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcfNP_536734.2 WAC_Acf1_DNA_bd 26..125 CDD:287503
DDT 346..411 CDD:214726
WHIM1 505..554 CDD:292246
WHIM2 637..666 CDD:292247
WHIM3 775..813 CDD:292248 7/39 (18%)
PHD_RSF1 1064..1109 CDD:277018 9/44 (20%)
PHD 1244..1284 CDD:214584 4/39 (10%)
Bromo_Acf1_like 1349..1463 CDD:99936 33/120 (28%)
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 32/151 (21%)
Bromo_polybromo_II 191..294 CDD:99948 26/154 (17%)
Bromo_polybromo_III 335..443 CDD:99951 19/129 (15%)
Bromo_polybromo_IV 512..613 CDD:99949 29/101 (29%)
Bromo_polybromo_V 641..733 CDD:99946
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.