DRSC/TRiP Functional Genomics Resources

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Protein Alignment Acf and brd8b

DIOPT Version :9

Sequence 1:NP_536734.2 Gene:Acf / 43751 FlyBaseID:FBgn0027620 Length:1476 Species:Drosophila melanogaster
Sequence 2:XP_017214481.1 Gene:brd8b / 337414 ZFINID:ZDB-GENE-030722-10 Length:864 Species:Danio rerio


Alignment Length:856 Identity:159/856 - (18%)
Similarity:285/856 - (33%) Gaps:253/856 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   679 KSQIEIRQQSALPKNRKDL--RVYLLKLYGDDEKKTKKKAKHSL----ENKENQEHRL------- 730
            |.::::.|...:....::|  .:.|.|...::|.:.||:|..:.    :..:|...|:       
Zfish   123 KKEVDLIQAGHVDPKLEELWAEIELKKKQEEEEAEQKKRATEAAYQIRQAAKNTPKRVPSVTVRS 187

  Fly   731 -NGSAEP-MDVESDSPEAPTHFELLMCSGDKRSCIVHDSRNGQRQRWAYIYKAEEIDELIKALNP 793
             .|::.| ||:.......|...|         ||                  |..:.:.:....|
Zfish   188 PPGASSPSMDILQPDASQPMTDE---------SC------------------ASPMAQGVTVFMP 225

  Fly   794 ------NGLREYELLQELSVLRSLIE-----QH----AKTCPVDLLSLENETMRKKFMAAMESET 843
                  .|.:|       |.|.||::     :|    |...|..|||   |.::|..:.|..|..
Zfish   226 VSDVMGPGPKE-------SGLSSLVDDSPQKKHLAPKATPPPSPLLS---ELLKKGSLIAASSRL 280

  Fly   844 NRKYGEANFGLPNGTDLNEVMRLHLVDRIIQFENDIYTGDLGRLKVKDMEKWRSDLLGGNYDAQC 908
            ..: ||...||.||   :..:.||....::....|| |.|...|         |.||.....||.
Zfish   281 VVE-GEVATGLSNG---SHAVELHTSATVLPATQDI-TADAPTL---------SRLLESVTPAQQ 331

  Fly   909 KLQWGPGGKLEDEAGSDNESHETHEEDDGALLGKYARKPYRDPGMYLAASADTKPLPDSDD---E 970
            .:...|                                  ..|...:..:.|...:|.|.|   .
Zfish   332 PVSADP----------------------------------PKPPTVVPPAPDHLSVPKSGDAAIA 362

  Fly   971 EDQHTNAV----SIPIAVHNMASALLQVEQAIGKRFLKEPYGM-----------KKWDPKQEALK 1020
            |.....||    |.|..|....:.|::.:..:...::.....:           :|.|...||| 
Zfish   363 EGSGAEAVMAGSSTPAEVEGKETELVEEDTVVSVSYMGHELDLETVGDIIAIIEEKVDDPVEAL- 426

  Fly  1021 LACDSRLHQWEVSLMESTSFAQVFLHLNILHDCIQ-WRRSTNKSLCKVCRRGSDPEKMLLCDECN 1084
               |:...:..:||.|..:...        |.... |...|.|:        ::||.|:      
Zfish   427 ---DAAAVEAALSLCEDPAVGG--------HPLTSPWESQTFKA--------AEPEPMI------ 466

  Fly  1085 AGTHMFCLKPKLRSVPPGNWYCNDCVKSLGLSNGQNEKDKKQATKKKRKFIVEEEDDEATDEEEE 1149
                      :..::|.|    .:...:..:..|:.|...::||:.:....|.||.:..:..|.|
Zfish   467 ----------QQSAIPAG----AESAPNSAIVQGEMEVLVEEATETEAVEGVTEEPEVPSAPETE 517

  Fly  1150 EKKDDDM-TDEDAEHENEKHDEDVEDDESVTSTPSSSRVNGRILRRPRTRPTSRRLTSKEIEEHA 1213
            :.:|.:: |:.:...|.|...|:....|:.|.:| :.:..|....:|.|  .:..|.|::....|
Zfish   518 QSQDSEVKTEVERGGEGEGGVEETAQPENRTPSP-AVKCEGEDWVQPET--VTPCLDSEDSSASA 579

  Fly  1214 QEDVDSGDVSDDASLTAGEDTIEDESDEEKVCQKCFYDGGEIKCVQCRLFFHLECVHLKRPPRTD 1278
            :   |:.:|.::   ..|.:...||..|.|.|                                 
Zfish   580 K---DAKEVKEE---DGGSEVDVDEGMEMKEC--------------------------------- 605

  Fly  1279 FVCKTCKPMPQRPRRRHSNMNGDHDRD-----EEEPKAKRPRNSLRLSIDK-TARPSNGNNNNNN 1337
                                 ||.|.:     |.:|.|....:.......: |...|..::..::
Zfish   606 ---------------------GDGDGEGPYLSEVDPPASESEDGYGSHSQRYTTADSTASSPASS 649

  Fly  1338 NNSSVNNNNHRRSGRRTNEHMPLNSAALYDLLEQIMKHKAAWPFLRPVLTSEVPDYHQIIKTPMD 1402
            ..|..:.:......::      :...|:..:......|:.|..||:||.....|.||.|:..|||
Zfish   650 QFSMCSEDQEALQAQK------IWKKAIMLVWRAAANHRYASVFLQPVSDDIAPGYHSIVHRPMD 708

  Fly  1403 LAKIKSKLNMGAYQLNEELLSDIQLVFRNCDLYNVEGNEIYDAGCQLERFVIDRCRDM---QLPF 1464
            |:.||..:..|..:...|...||.|:|:|..:||...:::|....:::|.|:::.:..   ||..
Zfish   709 LSAIKKNIESGQIRTTAEFQRDIMLMFQNAVMYNSSDHDVYHMALEMQRDVLEQIQQFLATQLIM 773

  Fly  1465 RPSDMNGEVKA 1475
            :.|:.....|:
Zfish   774 QTSESGISTKS 784

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcfNP_536734.2 WAC_Acf1_DNA_bd 26..125 CDD:287503
DDT 346..411 CDD:214726
WHIM1 505..554 CDD:292246
WHIM2 637..666 CDD:292247
WHIM3 775..813 CDD:292248 8/43 (19%)
PHD_RSF1 1064..1109 CDD:277018 5/44 (11%)
PHD 1244..1284 CDD:214584 1/39 (3%)
Bromo_Acf1_like 1349..1463 CDD:99936 30/116 (26%)
brd8bXP_017214481.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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