DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Acf and brd2a

DIOPT Version :9

Sequence 1:	NP_536734.2	Gene:	Acf / 43751	FlyBaseID:	FBgn0027620	Length:	1476	Species:	Drosophila melanogaster
Sequence 2:	NP_571275.2	Gene:	brd2a / 30445	ZFINID:	ZDB-GENE-990415-248	Length:	836	Species:	Danio rerio

Alignment Length:	114	Identity:	39/114 - (34%)
Similarity:	59/114 - (51%)	Gaps:	6/114 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly  1349 RSGRRTNEHMPLNSAALYDLLEQIMKHKAAWPFLRPVLTSE--VPDYHQIIKTPMDLAKIKSKLN 1411
            |.||.||:...|..|    |::.:.:|..||||..||..::  :|||:.|||.|||:..||.:|.
Zfish    69 RQGRMTNQLQFLQKA----LVKTLWRHHFAWPFHEPVDAAKLNLPDYYNIIKQPMDMGTIKKRLE 129

  Fly  1412 MGAYQLNEELLSDIQLVFRNCDLYNVEGNEIYDAGCQLERFVIDRCRDM 1460
            ...|:...|.:.|...:|.||.:||...::|......||:..:.:...|
Zfish   130 NNYYRSASECMQDFNTMFTNCYIYNKPTDDIVLMAQSLEKAFLQKVAQM 178

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Acf	NP_536734.2	WAC_Acf1_DNA_bd	26..125	CDD:287503
		DDT	346..411	CDD:214726
		WHIM1	505..554	CDD:292246
		WHIM2	637..666	CDD:292247
		WHIM3	775..813	CDD:292248
		PHD_RSF1	1064..1109	CDD:277018
		PHD	1244..1284	CDD:214584
		Bromo_Acf1_like	1349..1463	CDD:99936	39/114 (34%)
brd2a	NP_571275.2	Bromo_Brdt_I_like	72..178	CDD:99929	36/109 (33%)
		Bromo_Brdt_II_like	383..484	CDD:99930
		BET	676..738	CDD:293640
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5076
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810