DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mccc1 and Pc

DIOPT Version :9

Sequence 1:NP_001247391.1 Gene:Mccc1 / 43750 FlyBaseID:FBgn0039877 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_006230753.1 Gene:Pc / 25104 RGDID:3262 Length:1179 Species:Rattus norvegicus


Alignment Length:535 Identity:202/535 - (37%)
Similarity:298/535 - (55%) Gaps:38/535 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LRNFGANARCFATEASPKVR-----PISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSM 65
            ||..|......|..|||.||     ||.|::::||||||.||.|...:||:|||||:|:.|...|
  Rat    12 LRLLGVRRSSTAPVASPNVRRLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQM 76

  Fly    66 HTQLADESYRVGEA-ASSASYLRGERILDIAKRSGAQAIHPGYGFLSESVEFAELCQREGIIFMG 129
            |.|.|||:|.:|.. |...:||....|:.:||.:|..|:|||||||||..:||:.||..|:.|:|
  Rat    77 HRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIG 141

  Fly   130 PPSSAIRDMGIKSTSKAIMAAAGVPIINGYHGDDQSDECLQREADKIGFPLMIKAVRGGGGKGMR 194
            |....:|.||.|..::||..|||||::.|.:....|.......::..|||::.||..||||:|||
  Rat   142 PSPEVVRKMGDKVEARAIAIAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMR 206

  Fly   195 IAEKPDDFLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERDCSVQRR 259
            :....::.......|.:|:..:||:.::.:|:::..|||:|||:..||||:.::|:|||||:|||
  Rat   207 VVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRR 271

  Fly   260 HQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP 324
            |||::|.|||..|...||..|...:|:.||.|||..||||||::||.. ..:|:|:|:||||||.
  Rat   272 HQKVVEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHG-KHYFIEVNSRLQVEHT 335

  Fly   325 ITEMITGTDLVEWQIRIAAGEPLP---LKQSEITRRGHAFEARIYAENPRGGFLPGAGPLRYLST 386
            :||.||..|||..||.::.|..||   |:|..|...|.|.:.|:..|:|...|.|..|.:....:
  Rat   336 VTEEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEVFRS 400

  Fly   387 PQPSNNVRVE-TGVREGDEVSVHYDPMIAKLVVWGENRTQALNSLVARLGEYHISGLDTNINFLI 450
            .: ...:|:: ....:|..:|.|||.::.|::..|::...|...:...|.|:.:.|:.|||.||.
  Rat   401 GE-GMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVKTNIPFLQ 464

  Fly   451 DLASHPEFQLANVHTGFIDE--QFDTLFP------------------------PIIISPQQVSQA 489
            ::.::.:|....|.|.||||  :...|.|                        |:.:||..|...
  Rat   465 NVLNNQQFLAGIVDTQFIDENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVKVSPSPVDPI 529

  Fly   490 ALALVLNELQAAFRN 504
            ...:.:....|.||:
  Rat   530 VPVVPIGPPPAGFRD 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mccc1NP_001247391.1 PccA 27..693 CDD:227111 192/509 (38%)
CPSase_L_chain 27..135 CDD:278706 53/108 (49%)
CPSase_L_D2 141..348 CDD:280881 90/206 (44%)
Biotin_carb_C 362..469 CDD:214878 27/107 (25%)
biotinyl_domain 626..691 CDD:133459
PcXP_006230753.1 PRK12999 34..1179 CDD:237263 193/513 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D130620at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.