DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp13

DIOPT Version :10

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_001013042.1 Gene:Usp13 / 72607 MGIID:1919857 Length:858 Species:Mus musculus


Alignment Length:352 Identity:76/352 - (21%)
Similarity:130/352 - (36%) Gaps:71/352 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1646 DTDP-LREWDYLPPVGA--RPT--KGFCGLKNAGATCYMNSVLQQLYMVPAVR---VGIL-RAHG 1701
            |..| :.||:.:...|.  :|.  .|:.||||.|.:||::||:|.::.:|..:   ||.| |...
Mouse   307 DIKPRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFD 371

  Fly  1702 AATTD-GEDFSGDSDLTGGGLGSALFSGPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAI 1765
            .:..| .:||:......|.||.|..:|.|       |..|..||..:.:..|.....|...:...
Mouse   372 YSPLDPTQDFNTQMTKLGHGLLSGQYSKP-------PVKSELIEQVMKEEHKPQQNGISPRMFKA 429

  Fly  1766 FAHLGHSALQYYVPRGLWTHFKLLGEPVNLREQQDAVEFFMSLLESLDEGLKALGQPQLMNATLG 1830
            |....|...                   :...||||.|||:.|:..::........|..:...| 
Mouse   430 FVSKSHPEF-------------------SSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFL- 474

  Fly  1831 GSFSDQKI--CQECPHRYSK-----------------EEPFSVFSVDIRNHSSLTESLEQYVKGE 1876
               .:::|  ||....||::                 ::....:.:..|...:....|.:.|:.:
Mouse   475 ---VEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELITYELMRREAEANRRPLPELVRAK 536

  Fly  1877 L-----------LEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDY 1930
            :           .:..|.:.......|...||.......|..|.:|:|:|.:..:.| ..||:..
Mouse   537 IPFSACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWV-PRKFDVS 600

  Fly  1931 FEFPRILDMEPYTVSGLAKLEGEVVEV 1957
            .:.|.:||:......||...|.|:.::
Mouse   601 IDMPDLLDISHLRARGLQPGEEELPDI 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 Ubl1_cv_Nsp3_N-like <994..1060 CDD:475130
peptidase_C19C 1666..2064 CDD:239124 70/327 (21%)
DUF3517 2198..2566 CDD:463438
Usp13NP_001013042.1 zf-UBP_var 33..96 CDD:407678
zf-UBP 209..282 CDD:460464
Peptidase_C19B 335..854 CDD:239123 69/324 (21%)
UBA1_UBP13 650..698 CDD:270567
UBA2_UBP5 723..764 CDD:270569
Blue background indicates that the domain is not in the aligned region.

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