DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp12-46

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster


Alignment Length:493 Identity:109/493 - (22%)
Similarity:152/493 - (30%) Gaps:181/493 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1663 PTKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFS 1727
            |.:.:.||.|.|.|||.|||||.||.....|..:|..........|..                 
  Fly    19 PNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKRPKETL----------------- 66

  Fly  1728 GPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEP 1792
              .|.|..|..|.:|.:               |.|.:|            .|:...|..:...|.
  Fly    67 --LSCLADLFYSIATQK---------------KKVGSI------------APKKFITRLRKEKEE 102

  Fly  1793 VNLREQQDAVEFFMSLLESLDEGLKA-------LGQPQLMNATLGGSFS---------------- 1834
            .:...||||.||...|:..::|.:.|       .|.|:..|.  |||.|                
  Fly   103 FDNYMQQDAHEFLNFLINHINEIILAERNAGPSNGNPKATNQ--GGSTSAMASSIASKSSSTSNS 165

  Fly  1835 ----------------------------------------------------------------- 1834
                                                                             
  Fly   166 NSNSNSTTNSNGNSSNSTGSLNANTSVLDASGSLTATTTPIISGNGTGTNGANSEPTWVHEIFQG 230

  Fly  1835 ---DQKICQECPHRYSKEEPFSVFSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTV 1896
               .:..|..|....||:|.|....||:..::|:|..|..:...|.|...:.:.||.|.......
  Fly   231 ILTSETRCLNCETVSSKDENFFDLQVDVDQNTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQ 295

  Fly  1897 KRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNC 1961
            ||:.|||||.:||:.||||:|..:....||.:....||               ||..:....|:.
  Fly   296 KRMRVKKLPMILALHLKRFKYMEQFNRHIKVSHRVVFP---------------LELRLFNTSDDA 345

  Fly  1962 QTNVETTKYELTGIVVHSGQA-SGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHEDEEMKAE 2025
             .|.:.. |:||.:|:|.|.. :.|||.|.:.|..      .|..|||..|.:.:....|     
  Fly   346 -VNPDRL-YDLTAVVIHCGSGPNRGHYISIVKSHG------LWLLFDDDMVDKIEASTIE----- 397

  Fly  2026 CFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTRCD 2063
                ::.|.|.|.:         |.....|:|||...|
  Fly   398 ----DFYGLTSDIH---------KSSETGYILFYQSRD 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 108/490 (22%)
UCH 1668..2059 CDD:278850 105/482 (22%)
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 106/482 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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