DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp15-31

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_611959.2 Gene:Usp15-31 / 37954 FlyBaseID:FBgn0050421 Length:1272 Species:Drosophila melanogaster


Alignment Length:649 Identity:144/649 - (22%)
Similarity:221/649 - (34%) Gaps:233/649 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1555 AKELMFFLGADSKAQLNELIHELIDDFLFTASREFLHLRRHGSLRQDTVPPPVCRSPHTIAA--- 1616
            |:|.:|:        |.:.:||.::    |||:     ||:.||:..     ..||...|||   
  Fly   362 AQEFLFW--------LLDKVHEDLN----TASK-----RRYKSLKNS-----YGRSDEVIAAETL 404

  Fly  1617 ----ACD--LLIALCQ------LCVPNMKLLTNTLIDFVCTDTDPLREWDYLPPVGARPTKGFCG 1669
                .|:  .:.|:.|      |..|..:..:||...|.|....       ||.:..:..  |. 
  Fly   405 ANHIRCNNSFVQAVFQAQFRSSLTCPRCEKQSNTFDPFHCISVQ-------LPQLTQQTI--FV- 459

  Fly  1670 LKNAGATCYMNSVLQQLYM---VPA------------VRVGI---------LRAHG--------- 1701
                 ...||..:.:|:.|   |||            ...||         |.|.|         
  Fly   460 -----TVVYMTRLPRQVRMGLRVPAGSPIVALREQLQADTGIEGSRMVLVDLNAEGFTRVFYDTQ 519

  Fly  1702 -----------------AAT------TDGEDFSGDSDLTGGGLGSALFSGPASA-----LVSLPS 1738
                             |||      |..|  :||....     :|:...||:|     |:.|.:
  Fly   520 PVETLSSIETIYCIEVPAATPVAKAATPSE--TGDKSAP-----TAVTPSPAAAQSQADLLLLVA 577

  Fly  1739 SSSTIEDGLHDVRK-------------NYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLG 1790
            :....:||. |:.:             :|..:..:.::.:...|......|..|         |.
  Fly   578 NVYRAKDGA-DITRFGAPFSMKAPRDCSYQDLQKRMLREMAPLLKPEVFSYATP---------LA 632

  Fly  1791 EPVNLREQQ---------DAVEFFMSLLESLDEGLKALGQ---PQLMNATLGGS------FSDQK 1837
            |...:|.|.         :.||..: |.|.:|..|..|..   ||.:...|..|      .|.|:
  Fly   633 EMFRIRLQDPSADPDTYLEQVEHPL-LTEMIDMALSVLSSEAGPQHIKLLLEWSSPEAHFISKQQ 696

  Fly  1838 ICQEC--PH----RYSKEEPFSVFSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTV 1896
            ..:|.  .|    |.|..:|....::      :|.:.||.|.|.|.|...||:.|..|.:.:..|
  Fly   697 DTEEAVVEHESVARLSASKPSDTAAL------TLEQCLEHYTKAETLSAEDAWRCPHCQQYLPVV 755

  Fly  1897 KRVCVKKLPPVLAIQLKRF-EYDYERVCAIKFNDYFEFP-RILDMEPYTVSGLAKLEGEVVEVGD 1959
            |.:.:..||.:|.:..||| ::..:...|.|.....:|| ...||.|:...|:.:.....:.:|.
  Fly   756 KTLGLWSLPDILVVHFKRFRQHQSKGPQAAKLTTMVKFPLTAFDMSPHLARGVHESASSSLGMGT 820

  Fly  1960 --------------------------NCQTNVETTKYELTGIVVHSGQA-SGGHYFSYILSKNPA 1997
                                      |.:.:.:.|:|:|..:..|.|.. ..|||.:  ..|||.
  Fly   821 GIGLGLGLGSNPWKKARSVDSRSSTLNSRCDAKDTRYDLYAVCYHQGDTLETGHYTA--ACKNPY 883

  Fly  1998 NGKCQWYKFDDGEVTECKMHEDEEMKAECFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTR 2061
            :.  |||||||..|:  |:.||:           :.:...||             .||||||.|
  Fly   884 DR--QWYKFDDQRVS--KVPEDD-----------IEQDIINN-------------EAYMLFYQR 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 115/523 (22%)
UCH 1668..2059 CDD:278850 111/517 (21%)
Usp15-31NP_611959.2 Peptidase_C19 <262..>383 CDD:271592 9/37 (24%)
Peptidase_C19 266..>461 CDD:271592 30/135 (22%)
Peptidase_C19R <713..918 CDD:239139 59/240 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456893
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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