DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp2

DIOPT Version :10

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster


Alignment Length:433 Identity:98/433 - (22%)
Similarity:158/433 - (36%) Gaps:139/433 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1664 TKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSG 1728
            ::|.|||:|.|.||:||||:|.|.....:...:...||:.:...:|                   
  Fly   621 SEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKD------------------- 666

  Fly  1729 PASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPV 1793
                           :..||:        ..|.:|.::....|:.....:.|...|..::..:  
  Fly   667 ---------------QQILHE--------FAKLIQEMWTANVHTVTPMELKRAFSTKHRMYSD-- 706

  Fly  1794 NLREQQDAVEFFMSLLESLDEGLKALGQPQLMNATLGGSFSDQK--------------------- 1837
              ..||||.||....|:||...|.:..:.:.:|  :..:.||.|                     
  Fly   707 --YNQQDAQEFLRFFLDSLHSALNSGVKGETLN--IDDNLSDNKKADLTWEWYTRHENSLVRDLF 767

  Fly  1838 --------ICQECPHRYSKEEPFSVFSVDIRNHS--SLTESLEQYVKGELLEGADAYHCDKCDKK 1892
                    .|..|.:.....:||...||.:.:.|  .|...|:.:::.|:|:|.:...|.||..:
  Fly   768 VGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTR 832

  Fly  1893 VVTVKRVCVKKLPPVLAIQLKRF-EYDYERVCAIKFNDYFEFPRI---LDMEPYTVSGLAKLEGE 1953
            ....|...:::.|..|.|.|||| |..:.     |.::..|||..   |:|..|           
  Fly   833 RKCTKSFTIQRFPKYLVIHLKRFSETRWS-----KLSNIVEFPTSDSELNMGSY----------- 881

  Fly  1954 VVEVGDNCQTNVETTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHE 2018
                |.|..:||.   |.|..|..|.|..:||||.:  |.|:|.:.|  |::|:|..|::.    
  Fly   882 ----GANSNSNVH---YSLYAISNHMGSTAGGHYVA--LCKHPVSRK--WHEFNDNIVSDA---- 931

  Fly  2019 DEEMKAECFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTR 2061
                            ..:|:|...         :||:|||.|
  Fly   932 ----------------LSENHLVSS---------SAYILFYER 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 Ubl1_cv_Nsp3_N-like <994..1060 CDD:475130
peptidase_C19C 1666..2064 CDD:239124 98/431 (23%)
DUF3517 2198..2566 CDD:463438
Usp2NP_001285528.1 UBP12 <620..>800 CDD:227847 44/226 (19%)
Peptidase_C19R 626..948 CDD:239139 94/425 (22%)
Blue background indicates that the domain is not in the aligned region.

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