DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp13

DIOPT Version :10

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_001101135.1 Gene:Usp13 / 310306 RGDID:1306044 Length:858 Species:Rattus norvegicus


Alignment Length:345 Identity:74/345 - (21%)
Similarity:127/345 - (36%) Gaps:70/345 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1652 EWDYLPPVGA--RPT--KGFCGLKNAGATCYMNSVLQQLYMVPAVR---VGIL-RAHGAATTD-G 1707
            ||:.:...|.  :|.  .|:.||||.|.:||::||:|.::.:|..:   ||.| |....:..| .
  Rat   314 EWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPT 378

  Fly  1708 EDFSGDSDLTGGGLGSALFSGPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHS 1772
            :||:......|.||.|..:|.|       |..|..||..:.:..|.....|...:...|....|.
  Rat   379 QDFNTQMTKLGHGLLSGQYSKP-------PVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHP 436

  Fly  1773 ALQYYVPRGLWTHFKLLGEPVNLREQQDAVEFFMSLLESLDEGLKALGQPQLMNATLGGSFSDQK 1837
            ..                   :...||||.|||:.|:..::........|..:...|    .:::
  Rat   437 EF-------------------SSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFL----VEER 478

  Fly  1838 I--CQECPHRYSK-----------------EEPFSVFSVDIRNHSSLTESLEQYVKGEL------ 1877
            |  ||....||::                 ::....:.:..|...:....|.:.|:.::      
  Rat   479 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELMRREAETNRRPLPELVRAKIPFSACL 543

  Fly  1878 -----LEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDYFEFPRIL 1937
                 .:..|.:.......|...||.......|..|.:|:|:|.:..:.| ..||:...:.|.:|
  Rat   544 QAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWV-PRKFDVSIDMPDLL 607

  Fly  1938 DMEPYTVSGLAKLEGEVVEV 1957
            |:......||...|.|:.::
  Rat   608 DISHLRARGLQPGEEELPDI 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 Ubl1_cv_Nsp3_N-like <994..1060 CDD:475130
peptidase_C19C 1666..2064 CDD:239124 70/327 (21%)
DUF3517 2198..2566 CDD:463438
Usp13NP_001101135.1 zf-UBP_var 33..96 CDD:407678
zf-UBP 209..282 CDD:460464
Peptidase_C19B 335..854 CDD:239123 69/324 (21%)
UBA1_UBP13 650..698 CDD:270567
UBA2_UBP5 723..764 CDD:270569
Blue background indicates that the domain is not in the aligned region.

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