DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp27x

DIOPT Version :10

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_001388057.1 Gene:Usp27x / 302566 RGDID:1564628 Length:438 Species:Rattus norvegicus


Alignment Length:497 Identity:113/497 - (22%)
Similarity:176/497 - (35%) Gaps:149/497 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1632 MKLLTNTLIDF------VCTDTDPLREWDYLPP----VGARP---------TKGFCGLKNAGATC 1677
            :||..:|..:|      |.:..:....|:...|    :|..|         |.|..||.|.|.||
  Rat    23 LKLQASTSTEFSQQQCSVPSLGEKYPTWETTKPELELLGHNPRRRRIASSFTIGLRGLINLGNTC 87

  Fly  1678 YMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSGPASALVSLPSSSST 1742
            :||.::|.|...|.:|...|...........:.....:::  .|...|:||..|           
  Rat    88 FMNCIVQALTHTPILRDFFLSDRHRCEMPSPELCLVCEMS--SLFRELYSGNPS----------- 139

  Fly  1743 IEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNLREQQDAVEFFMS 1807
                             .||.....||            :|.|.:.|..    ..||||.||.::
  Rat   140 -----------------PHVPYKLLHL------------VWIHARHLAG----YRQQDAHEFLIA 171

  Fly  1808 LLESL------DEGLKALGQPQLMNATL-----GGSFSDQKICQECPHRYSKEEPFSVFSVDI-- 1859
            .|:.|      |:..|....|...|..:     ||..|| ..||.|....:..:|....|:|:  
  Rat   172 ALDVLHRHCKGDDVGKVASNPNHCNCIIDQIFTGGLQSD-VTCQACHGVSTTIDPCWDISLDLPG 235

  Fly  1860 ------------------RNH----SSLTESLEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVK 1902
                              .:|    ::||:.|.::.:.|.|..:....|..|.....:.|::.:|
  Rat   236 SCTSFWPMSPGRESSLNGESHIPGVTTLTDCLRRFTRPEHLGSSAKIKCGSCQSYQESTKQLTMK 300

  Fly  1903 KLPPVLAIQLKRFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGL-AKLEGEVVEVGDNCQTNVE 1966
            |||.|.....||||:..::  ..|...|..||..|||.|:..|.. .::.|: :::..|...|  
  Rat   301 KLPVVACFHFKRFEHSAKQ--RRKITTYISFPLELDMTPFMASSKETRMNGQ-LQLPTNSGNN-- 360

  Fly  1967 TTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHE--DEEMKAECFGG 2029
            ..||.|..:|.|.|....|||.|:|     .:.:.||:|.||..:|:..:.:  |.|        
  Rat   361 ENKYSLFAVVNHQGTLESGHYTSFI-----RHHRDQWFKCDDAVITKASIKDVLDSE-------- 412

  Fly  2030 EYMGETYDNNLKRMQYRRQKRWWNAYMLFYTRCDQTPVQYEP 2071
                                    .|:|||   .:..:::||
  Rat   413 ------------------------GYLLFY---HKQVLEHEP 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 Ubl1_cv_Nsp3_N-like <994..1060 CDD:475130
peptidase_C19C 1666..2064 CDD:239124 101/435 (23%)
DUF3517 2198..2566 CDD:463438
Usp27xNP_001388057.1 Peptidase_C19D 78..419 CDD:239125 100/432 (23%)
Blue background indicates that the domain is not in the aligned region.

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