DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and usp-48

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_001361851.1 Gene:usp-48 / 172782 WormBaseID:WBGene00009267 Length:1264 Species:Caenorhabditis elegans


Alignment Length:547 Identity:119/547 - (21%)
Similarity:196/547 - (35%) Gaps:179/547 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1669 GLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSGPASAL 1733
            ||.|.|..||:||.||..:.||..|..|.           ||....:          |..|.:..
 Worm   109 GLINGGNFCYVNSFLQVWFNVPEFRQLIY-----------DFRPSEN----------FVPPEAPR 152

  Fly  1734 VSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNL--- 1795
            :::.::...::|..:.::.                               |.|....:..||   
 Worm   153 MNVQATMLALQDIFYTLQT-------------------------------TPFNETDKTSNLGKL 186

  Fly  1796 ----REQQDAVEFFMSLLESLD----------EGLKALGQPQLMNATLGGSFSDQKICQECPHRY 1846
                .||||:.||.:....:|:          |.||.|      .....|....:.:| :|..|.
 Worm   187 LRLNSEQQDSQEFGLKFFNALERCLPDHPNGKETLKRL------KDLFTGETCTRIVC-KCGQRS 244

  Fly  1847 SKEEPFSVFSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQ 1911
            .:||.....:::|..:.:|.::|:.|. ||  |..|.:.|.||:|.....|:....|||||:.||
 Worm   245 EREETAISLTLNIEGYCTLLDALDAYF-GE--EHLDDFKCSKCNKTGDVSKQSDYVKLPPVIVIQ 306

  Fly  1912 LKRFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNCQTN----VETTKYEL 1972
            |.|::|..:.  ..|......:||.:..:.:.                  :||    .....|:|
 Worm   307 LNRYKYTSKG--RQKLKTPMAYPREIPAKAFQ------------------RTNNSIPPPAEMYDL 351

  Fly  1973 TGIVVHSG-QASGGHYFSYILSKNPANGKCQWYKFDDGEV----------------TECKMHEDE 2020
            ..:.:|.| .|..|||  |.|.|:|.|.|  ||:::|..:                ||....:|:
 Worm   352 FAVTIHEGNNAECGHY--YDLIKSPLNQK--WYRYNDEAIEAIPKPPGTEKPTTAKTEKSRKKDK 412

  Fly  2021 E-----MKAECFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTRCDQTPVQYEPSVEQLSLAE 2080
            |     .|| |:|              :.|||:..:             .|:.:.....:..:.:
 Worm   413 EKYPTDQKA-CYG--------------LLYRRRDAF-------------KPLPHPKLPPEELIID 449

  Fly  2081 SRNMVLPL-----PKPIERSVRHQNIRFLHSRSIFSVE-FFNFIKKLVSCNLLSARSNKITPAAE 2139
            |:..:..|     .|.||:|          .:.::.:| ..|.:|  :|...|...|:|...|.|
 Worm   450 SKTEIEELFEGLTKKKIEKS----------EKRLYDLERRINKVK--ISYGKLETHSDKYKEANE 502

  Fly  2140 EL----SLLGVQLASQFLFHTGFRTKK 2162
            .:    :||...||.::....|.:.||
 Worm   503 VVFLPTTLLQDVLAQEYEVAKGEKKKK 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 96/437 (22%)
UCH 1668..2059 CDD:278850 96/432 (22%)
usp-48NP_001361851.1 UCH 108..394 CDD:395355 85/370 (23%)
Ubiquitin_like_fold 1161..1264 CDD:421700
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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