DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment faf and Usp48

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:XP_017175494.1 Gene:Usp48 / 170707 MGIID:2158502 Length:1054 Species:Mus musculus


Alignment Length:1043 Identity:225/1043 - (21%)
Similarity:365/1043 - (34%) Gaps:343/1043 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1657 PPVGARPTKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGL 1721
            |....|....|.||.|.|||||:|:.||..::...:|                            
Mouse    78 PNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELR---------------------------- 114

  Fly  1722 GSALFSGPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHF 1786
             .||:..|::.      |..|..||:|..:......|.:|:|.:||.|.:|..:|..|.|.   .
Mouse   115 -QALYLCPSTC------SDYTKGDGIHGGKDYEPQTICEHLQYLFALLQNSNRRYIDPSGF---V 169

  Fly  1787 KLLGEPVNLREQQDAVEF---FMSLLESLDEGLKALGQPQLMNAT---LGGSFSDQKICQECPHR 1845
            |.||  ::..:||||.||   ||||||   :.|.....|.:.|..   ..|.::...:|.:|...
Mouse   170 KALG--LDTGQQQDAQEFSKLFMSLLE---DTLSKQKNPDVRNVVQQQFCGEYAYVTVCNQCGRE 229

  Fly  1846 YSKEEPFSVFSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAI 1910
            ......|....::|:.|..||:.:.:::|.|.|||.:.|.|:.|..|....:::.:..||..|.:
Mouse   230 SKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNL 294

  Fly  1911 QLKRFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNCQTNVETTKYELTGI 1975
            ||.||.:|.:.....|.|.|..|...||||||    :....|..|              |||:.:
Mouse   295 QLMRFVFDRQTGHKKKLNAYIGFSESLDMEPY----VEHKGGSFV--------------YELSAV 341

  Fly  1976 VVHSG-QASGGHYFSYILSKNPANGKCQWYKFDD-------GEVTECKMHED-------EEMKAE 2025
            ::|.| .|..|||.:::  |:|.:|  :||||:|       |:..:..:.||       :..|.:
Mouse   342 LIHRGVSAYSGHYIAHV--KDPQSG--EWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPK 402

  Fly  2026 CFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFY----TRCDQTPVQYEPSVEQL---------- 2076
            |..|.:...                  |||||.|    ...:.|.||....:::|          
Mouse   403 CGKGTHCSR------------------NAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEE 449

  Fly  2077 ---SLAESRNMVLPLPKPIERSVRHQNIRFLHSRSIFSVEFFNFIK--------------KLVSC 2124
               .:||.|...:...|     .:|:.::.|:.|.....|.:.|:.              |.:..
Mouse   450 WCVEMAEMRKQSVDKGK-----AKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDN 509

  Fly  2125 NLLSARSNKITPAAEELSLLGVQLASQF---LFHTGF-----RTKKS--------------LRGP 2167
            |......:|:.|  :::|::  :..|::   :|::.:     .|.|:              |:..
Mouse   510 NACLCSHDKLHP--DKISIM--KRISEYAANIFYSRYGGGPRLTVKALCKDCVVERCRVLRLKNQ 570

  Fly  2168 VMEWYDALSHHIRSS-----------ALVRKWFANHALLSPPSRLGEYILMAPSPDVRTVFVKLV 2221
            :.|.|.|:::.::|:           :.:|.| ...||.....:.||    |...:.:       
Mouse   571 LNEDYKAVNNLLKSTMKGSDGFWVGKSSLRSW-RQLALEQLDEQDGE----AEQSNGK------- 623

  Fly  2222 VFFCHFAIN---------------DEPLTGYDGANLCEQVLISV----LRLLKSEAADYGKHLPH 2267
                   ||               :|....::...||....:|:    .||:..||  :.| |..
Mouse   624 -------INGSTFNKDESKEEKKEEEEELNFNEDILCPHGELSISENERRLVSQEA--WSK-LQQ 678

  Fly  2268 YF---------------------------SLFSMYVGLGTREKQQLLRLNVPLQFIQVALDDGPG 2305
            ||                           :|..|   :...:|..|..|          ..|...
Mouse   679 YFPKAPEFPSYRECCSQCKILEREGEENEALHKM---IANEQKTSLPNL----------FQDKNR 730

  Fly  2306 PAIKYQYPEFSKLHQVVSHLI------------RCSDVSE------KC---------QSSNQNAR 2343
            |.:. .:||.:....:|||..            |.:.||.      .|         .|..:...
Mouse   731 PCLS-NWPEDTDALYIVSHFFLDEWRKFVRKPARSAPVSSIGNAALLCPHGGLMFTFPSLTKEDS 794

  Fly  2344 PLSNPFKD-----PNVAHEELT---PLSTECMDLLFNRTGYIKKVIEDT--NVGDEGLKLLQYCS 2398
            .|..|.:.     |..||..:.   |...:.:..||    .:.|||:.|  .|||......||.|
Mouse   795 KLCQPLERREGGWPTAAHNNIALIWPSEWQMIQKLF----VVDKVIKITRIEVGDVNPSQTQYIS 855

  Fly  2399 WENPHFSRAVLTELLWQCGFAYCHDMRHHTDLLL-------NILLIDDSWQHHRI---------- 2446
              .|.........||.|    ...|:|.:|...:       |..::.||.....:          
Mouse   856 --EPSLCPDCREGLLCQ----QQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKE 914

  Fly  2447 -----------HNALNGVAEEREGLLETIQRAKTHYQKRAYQIIKCLTQLFHKSPIALQMLHTNS 2500
                       .|..||..:.:    :|.|:....|||   |:|:..|:  |:.....:.|..::
Mouse   915 EAKPDGEKDPDFNQSNGSTKRQ----KTSQQGYVAYQK---QVIRRSTR--HRKVRGEKALLVSA 970

  Fly  2501 NIT 2503
            |.|
Mouse   971 NQT 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 115/422 (27%)
UCH 1668..2059 CDD:278850 113/411 (27%)
Usp48XP_017175494.1 Peptidase_C19L 90..419 CDD:239133 113/411 (27%)
DUSP 484..554 CDD:368848 11/73 (15%)
Ubl_USP48 958..1053 CDD:340493 3/16 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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