DRSC/TRiP Functional Genomics Resources

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Protein Alignment faf and Usp9y

DIOPT Version :10

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:NP_683745.2 Gene:Usp9y / 107868 MGIID:1313274 Length:2556 Species:Mus musculus


Alignment Length:2641 Identity:1181/2641 - (44%)
Similarity:1631/2641 - (61%) Gaps:249/2641 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TVANSSLPGGGSGSLDGNQDQQPATDSQSSDDVAASLSANSVDSTITIVPP------------EK 102
            |:.....|.|.:.|.....|.||....| .:.:::|.|:|....|   .||            |:
Mouse     2 TITTRGSPVGENESQGQTSDGQPQPSFQ-QNQISSSDSSNETSPT---TPPYEQGQGDAPPQHEE 62

  Fly   103 LISSFPTTKLRSLTQKISNPRWVVPVLPEQELEVLLNAAIELTQAGVDHDCEPCVEFYRNGLSTS 167
            ...|||.|.|..|...|:..||||||||:.||||||.|:|:||:.|:|...|.|..|:|:.|:.|
Mouse    63 EDPSFPHTDLAKLEDMINRSRWVVPVLPKGELEVLLEASIDLTKKGLDVKSEACQRFFRDVLTVS 127

  Fly   168 FAKILTDEAVNSWKNNIHHCILVSCGKLLHLIAIHMQRDNPYLLDLLAIVFDPENKFNTFNAGRQ 232
            |:|||.||||:.||..||.||:.:..:|:.|....:.:|....|:||||..:|..||:.:|..|.
Mouse   128 FSKILMDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPFLELLAIALNPHCKFHVYNGARP 192

  Fly   233 PECFAAPDYIWGQLDSNKMYARPPPEPKNARGWLVDLINRFGQLGGFDNLLERFNIGLELLKRNQ 297
            .|..::.    .|...::::| ..|:..:.:||||||||.||.|.||..|.:||..|        
Mouse   193 CESVSSS----VQFPEDELFA-CSPDLHSPKGWLVDLINTFGTLNGFQILHDRFTSG-------- 244

  Fly   298 NKCTGKNISVEGRVENGAQDNRLTLALIHSLLRPFGQCYELLMPATIAKYFMPTWNVVLDLLDSF 362
                                :.|.:..|.:|::|||||||.|...|:.|||:|...||..:|...
Mouse   245 --------------------SALNVQTIAALIKPFGQCYEFLTQHTLRKYFIPVIEVVPQILQKL 289

  Fly   363 TDEELKREVKPEGRNDYINGIVKSARLLASRLTGQEELIRDLEMFRLKMILRLLQVSSFNGKMNA 427
            |:||||:|.|.|.:||.|:.|:|..:.||||:.||||.:::||.|||||||||||:|||||||||
Mouse   290 TNEELKKETKTEVKNDTISMIIKFLKNLASRIPGQEETVKNLETFRLKMILRLLQISSFNGKMNA 354

  Fly   428 LNEINKVLSSVAYFSHRSQPLPHCMPEDEMDWLTADRMAQWIKSSDVLGVVLKDSLHQPQYVEKL 492
            |||||||||||:|::|     .|...|:|  |||.:||.:||:.:::|.:||:|||||||||||:
Mouse   355 LNEINKVLSSVSYYTH-----GHGNSEEE--WLTVERMTEWIQQNNILSIVLQDSLHQPQYVEKI 412

  Fly   493 EKIIRFLIKEQALTLDDLDAVWRAQAGKHEAIVKNVHDLLAKLAWDFTPEQLDHLFEAFQASMTT 557
            |||:||:|||:||||.||:.:|.||||||||||||||||||||||:|:||||||||:.|:||.|.
Mouse   413 EKILRFVIKEKALTLQDLNNIWAAQAGKHEAIVKNVHDLLAKLAWNFSPEQLDHLFDCFKASWTN 477

  Fly   558 ANKRQRERLLELIRRLAEDDKNGVMAQKVLKLFWTLAHSQEVPPEVLDQALGAHVKILDYSCSQE 622
            |:|:|||:|||||||||||||:||||.|||.|.|.||||.:||.:::|.||.||:|||||||||:
Mouse   478 ASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDYSCSQD 542

  Fly   623 RDAQKTIWLDKCVDELKSGDGWVLPALRLIRDICCLYDTTTNHAQRTQTSTN---RQQVIERLQN 684
            ||.||..|:|..::|.::.:.||:|||:.|::||.|:.....:..:|..|..   |..:|.:||:
Mouse   543 RDTQKIQWIDCFIEEFRTNNKWVIPALKQIKEICSLFGEAPQNLSQTHQSPRVFYRHDLISQLQH 607

  Fly   685 DYSLVILVTNSLTAYMEKVRQMVTDSPGLDATRILIDGRFPHHVQIAERLEFLKFLLKDGQLWLC 749
            :::||.||..:|.|||..:|....|....|...:.:..|:.|..::.|||.||:|||||||||||
Mouse   608 NHALVTLVAENLAAYMNSIRLYARDHEDYDPQTVRLGSRYSHVQEVQERLNFLRFLLKDGQLWLC 672

  Fly   750 ADQAKQIWHCLAVNAVFPADREECFRWFGKLMGEEPDLDPGINKDFFENNILQLDPHLLTESGIK 814
            ..||||||:|||.|||:.:|||.||.|:.||||:||||.|.|||:|||:|:|||||.||||:|:|
Mouse   673 VSQAKQIWNCLAENAVYFSDREACFMWYSKLMGDEPDLHPDINKEFFESNVLQLDPSLLTENGMK 737

  Fly   815 CFERFFKAVNSKEDKLKAIHRGYMLDNEDLIGKDYLWRVITTGGEEIASKAIDLLKEVSTALGPR 879
            |||||||.||.:|.||....:.||:|:.||||.||||:|:....::|:|:|||||||:.|:|||:
Mouse   738 CFERFFKTVNCREGKLMIKRKIYMMDDLDLIGLDYLWKVVIQSNDDISSRAIDLLKEIYTSLGPK 802

  Fly   880 LQENIAEFHEMFIGECCSRLRTHYGNIVILGKTQLQEELDAPDQSDNTNDESKDSKMRFI--EAE 942
            ||.|....||.||..|..||:..|..:.:|                   |..||:.....  ||.
Mouse   803 LQANQVVIHEDFIQSCFDRLKASYDTLCVL-------------------DSEKDNIFSCARQEAI 848

  Fly   943 KMCRILKVLQEYVKECDRSFSGDRVHLPLSRVTRGKNTILYIRFQNPGRSIDDMEIVTHSNETMA 1007
            :|.|||.||:||:.|.|..:..:|:.||:||..|||:....:||.|.|:.::|::|::|:|.|:.
Mouse   849 RMVRILTVLREYISEYDSDYHEERMILPMSRAFRGKHLSFTVRFPNQGKEVEDLDILSHTNATIG 913

  Fly  1008 AFKRNLLKRIKGTSTANIKVDLFYANDEMIGVSDEINPLYQYTIRDKMNLTAKLTPVGTGLASSP 1072
            :.:|.:|.|: ..:.|:.|::||... |::...|:...:.|..::||..:|||...:.:.:.|||
Mouse   914 SVRRCILNRM-NVNVAHTKIELFIGG-ELVASEDDRKLVEQLNLKDKSLITAKFIQINSNMPSSP 976

  Fly  1073 DSSSDSSTGSPPRPC----PDMQRVESESTLPGVIISQNYQYTEFFLKLYQLGSDLEHGRLRDSA 1133
            |||||||.|.|....    .|:...|.|..|||||:|...:|..|..::..|||.|....|||.|
Mouse   977 DSSSDSSAGPPGNHSHNNYRDVSNPEMEKCLPGVIMSLQPRYISFLWQVADLGSMLTVPTLRDGA 1041

  Fly  1134 KVLLHLLPCDRQTIRQLKIMCKVPKAAVTVAVTGDKIAKDEEEKLYPTEQAGIEDEEEHCTPEQM 1198
            ::|:.|:|.|..|:.||:.:|                          ::...:.:.....:...:
Mouse  1042 RILMKLMPPDSTTLEQLRALC--------------------------SDHVNLGERRLGQSLHSL 1080

  Fly  1199 FLHPTPAQVLYNLSVLHGLLIPALDPLGESALLVQSAWMHSGCAHFVLELLTKNNFLPSADMHTK 1263
            |...:.:||||...|::.||:||..||.:.:...|..::.||....||.:|.:|||||:.|:.|:
Mouse  1081 FFGSSASQVLYLTEVVYTLLMPAGAPLADISSDFQYHFLKSGGLPLVLSMLIQNNFLPNTDVETR 1145

  Fly  1264 RASFQCVLRLAKLFLYIVG----SVLSRV------GDEPMICDLDNGSRSQVDILKQNFSTMPS- 1317
            |.::...|::|||.|.|||    ..::..      |.:|. ..::..:..|..:|:....::|: 
Mouse  1146 RDAYFSALKIAKLLLTIVGYGHVQAIAEACQPVADGTDPK-TPINQVTHDQAVVLQNALQSIPNP 1209

  Fly  1318 SSQGTLRAISAKLAVILAREMLSASPEGDRCRTLFSSTLQWSCPDISTIKAVVQLAWASSCGNLQ 1382
            ||:..||.:|..||     :.:|.         |.|..:    |||..|:|:.::.||:.||:|:
Mouse  1210 SSECMLRNVSVHLA-----QQISG---------LASRYI----PDICVIRAIQKIIWAAGCGSLE 1256

  Fly  1383 ALGNSSGDFED------------EVIVPDGQDFSMCKEALEVLTISFILNPSANEALTSDPNWPK 1435
            .:.:.:.|..:            ||     :|..:|.|||||:|:.|.|.|:|.::|..:..|..
Mouse  1257 LVFSPNEDITETYKMTTSTRSNLEV-----KDEQVCCEALEVMTLCFALIPTAMDSLNKEKAWQS 1316

  Fly  1436 FITSIVLKNPLRHVRQVASEQLFLASTYCAGDRRPFVYMVNLLVGALKTLVPQYESTCAEFFSVL 1500
            |:..::|..|.:.|||:|.||.||..|.|....||.::.:.||...|.....:.......:|::|
Mouse  1317 FVIDLLLYCPSKTVRQLAQEQFFLICTRCCMGHRPLLFFITLLFTILGGAANEKGKHSDVYFTLL 1381

  Fly  1501 CRTLSYGCIYNWPLQIS--EGLLGDEIKWLQRIRENVHATGDTQVHEELLEGHLCLAKELMFFLG 1563
            .|.|:|.  ||..:|:.  :.||.|||.||:|:|:.:..||:|.|.:.:|||||.:.|||:.|..
Mouse  1382 RRLLTYA--YNSNIQVPNVDVLLNDEIDWLKRVRDYIKNTGETNVEDPILEGHLGVTKELLSFQS 1444

  Fly  1564 ADSKAQLN------ELIHELIDDFLFTASREFLHLRRHGSL--RQDTVPPPVCRSPHTIAAACDL 1620
            .:.|..:.      .|:.||||.|:|.||:.:|...|.|.|  :|..   |||.||.||.|..:|
Mouse  1445 PEKKYHIGCKTGGANLVKELIDYFIFPASKAYLQYMRSGELPIKQAI---PVCGSPATINAGFEL 1506

  Fly  1621 LIALCQLCVPNMKLLTNTLIDFV-----CTDTDPLREWDYLPPVGARPTKGFCGLKNAGATCYMN 1680
            |:||...||.|:|.:.|.|.:..     .|..:.:.||:||||||.||.|||.||||||||||||
Mouse  1507 LVALAFGCVRNLKQIVNCLTELFYIGTPVTTCEAVGEWEYLPPVGPRPPKGFVGLKNAGATCYMN 1571

  Fly  1681 SVLQQLYMVPAVRVGILRAHGA-ATTDGEDFSGDSDLTGGGLGSALFSGPASALVSLP------S 1738
            ||:|||||:|::|..||..... :.||.:.|.|:...:...:      .|...:...|      .
Mouse  1572 SVIQQLYMIPSIRNSILAIDSIWSDTDDDIFKGEKQDSENNV------DPRDDVFRYPHQFEDKP 1630

  Fly  1739 SSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNLREQQDAVE 1803
            :.|.:||     ||.|::.:|||:|..|.||..|.||||||:|.|..|:|.|||||||||.||:|
Mouse  1631 TLSKVED-----RKEYNIAVLKHLQITFGHLAASQLQYYVPKGFWQQFRLWGEPVNLREQHDALE 1690

  Fly  1804 FFMSLLESLDEGLKALGQPQLMNATLGGSFSDQKICQECPHRYSKEEPFSVFSVDIRNHSSLTES 1868
            ||.||::||||..||||.|.:::..|||||:||||||.|||||..||.|:..:||||||.:|.:|
Mouse  1691 FFNSLVDSLDEAFKALGYPTVLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDS 1755

  Fly  1869 LEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDYFEF 1933
            |||||||:|||||:||||:||||||.||||:.:||||.||.||||||:||:||.|||||||||||
Mouse  1756 LEQYVKGDLLEGANAYHCEKCDKKVDTVKRLLIKKLPSVLTIQLKRFDYDWERECAIKFNDYFEF 1820

  Fly  1934 PRILDMEPYTVSGLAKLEGEVVEVGDNCQTNV------------ETTKYELTGIVVHSGQASGGH 1986
            ||.||||||||:|..||||:.|    |.||.:            .:|||.|.|::||||||:|||
Mouse  1821 PRELDMEPYTVAGATKLEGDSV----NPQTQLIKQNEQSESVIPGSTKYRLVGVLVHSGQANGGH 1881

  Fly  1987 YFSYILSKNPANGK-CQWYKFDDGEVTECKMHEDEEMKAECFGGEYMGETYDNNLKRMQYRRQKR 2050
            |:|||:.:|..:.| ..|:|||||:||||||.:|||||.:|||||||||.:|:.:|||.||||||
Mouse  1882 YYSYIIQRNGKDSKRSHWFKFDDGDVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKR 1946

  Fly  2051 WWNAYMLFYTRCDQTPVQYE--PSVEQLSLAESRNMVLPLPKPIERSVRHQNIRFLHSRSIFSVE 2113
            |||||:|||.|.|.|....|  ..:.:|:......::.|   .|||||..||::|||::..||:|
Mouse  1947 WWNAYILFYERMDITDEDDEIITYISELTFTRPHQIMSP---AIERSVWKQNVQFLHNQMQFSLE 2008

  Fly  2114 FFNFIKKLVSCNLL----SARSNKITPAAEELSLLGVQLASQFLFHTGFRTKKSLRGPVMEWYDA 2174
            :|.|||||::||.:    :...:.:.|.||:::::.:||||:|||.|||.|||.:|||..:||||
Mouse  2009 YFQFIKKLLTCNAVYLSPAPGQDHLLPEAEDITMISIQLASRFLFTTGFHTKKIIRGPANDWYDA 2073

  Fly  2175 LSHHIRSSALVRKWFANHALLSPPSRLGEYILMAPSPDVRTVFVKLVVFFCHFAIND----EPLT 2235
            |...:|.|..||.||.::.|.:..:|..||:|..||.::|..|.||:||..||::.|    .|.|
Mouse  2074 LCILLRHSKNVRFWFVHNVLFNVSNRFSEYLLECPSAEIRGTFAKLIVFIAHFSLQDGSSPSPFT 2138

  Fly  2236 G-----------YDGANLCEQVLISVLRLLKSEAADYGKHLPHYFSLFSMYVGLGTREKQQLLRL 2289
            .           ||..:|.:.:|.:||.||:.|.:::|:||..||:||.||..||..||.|||:|
Mouse  2139 SPFANPGPYSQIYDNLSLSDHLLKAVLSLLRREVSEHGRHLQQYFNLFIMYASLGLAEKTQLLKL 2203

  Fly  2290 NVPLQFIQVALDDGPGPAIKYQYPEFSKLHQVVSHLIRCSDVSEKCQSSNQNARPLSNPFKDPNV 2354
            |||..|:.|:||:||||.:||||.|.||||.|||.||||..||.:.|||.....||.|||.|||:
Mouse  2204 NVPATFMLVSLDEGPGPPVKYQYAELSKLHSVVSQLIRCCSVSSRMQSSINGNPPLPNPFGDPNL 2268

  Fly  2355 AHEELTPLSTECMDLLFNRTGYIKKVIEDTNVGDEGLKLLQYCSWENPHFSRAVLTELLWQCGFA 2419
            : :.:.|:.....|:||.||.|:||||||.:..::.:|||.:|.||||.||.:||:|||||...:
Mouse  2269 S-QPIMPIQQNVADILFMRTTYMKKVIEDCSNSEDTVKLLLFCCWENPQFSCSVLSELLWQVAHS 2332

  Fly  2420 YCHDMRHHTDLLLNILLIDDSWQHHRIHNALNGVAEEREGLLETIQRAKTHYQKRAYQIIKCLTQ 2484
            :.::::.:.||||.|:|.:||||.|||||||.|:..:::||.:|||.:|.|:||||||.||.:..
Mouse  2333 HAYELQPYLDLLLQIILFEDSWQAHRIHNALKGIPNDQDGLFDTIQHSKNHHQKRAYQCIKWMVT 2397

  Fly  2485 LFHKSPIALQMLHTNSNITRHWSIAVEWLQGELDRQRGIG-CQYNSYSWSPPAQSNDNTNGYMLE 2548
            ||:..|:|.|:|..|.::...|:.|:|||..||:|:...| .||...:||||.|||:..|||.||
Mouse  2398 LFNSCPVAYQILQGNGDLKNKWTWAMEWLGDELERKPYSGNPQYTYSNWSPPVQSNETANGYFLE 2462

  Fly  2549 RSQSAKNTWSMAFELCPDEVSEKTDENNEPNLETNMDENKS 2589
            :|.|||...:.|.:|.|:|         :|:.:..:||:.|
Mouse  2463 KSHSAKMKLTKACDLYPEE---------DPDDQDALDEHVS 2494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 Ubl1_cv_Nsp3_N-like <994..1060 CDD:475130 18/65 (28%)
peptidase_C19C 1666..2064 CDD:239124 244/417 (59%)
DUF3517 2198..2566 CDD:463438 182/383 (48%)
Usp9yNP_683745.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68 16/69 (23%)
Ubl1_cv_Nsp3_N-like <900..964 CDD:475130 18/65 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 971..999 13/27 (48%)
peptidase_C19C 1557..1960 CDD:239124 244/417 (59%)
DUF3517 2097..2457 CDD:463438 171/360 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2513..2556
Blue background indicates that the domain is not in the aligned region.

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