DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment faf and usp34

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:XP_002939554.2 Gene:usp34 / 100490033 XenbaseID:XB-GENE-920965 Length:3550 Species:Xenopus tropicalis


Alignment Length:2623 Identity:510/2623 - (19%)
Similarity:882/2623 - (33%) Gaps:905/2623 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TVANSSLPGGGSGSLDGNQDQQPATDSQSSDDVAASLSANSVDSTITIVPPEKLISSFPTTKLRS 114
            ::.|::||       .||:...|||..||||:.....|..|     .|...|::::     :.:.
 Frog   494 SLLNTNLP-------MGNKKGSPATSPQSSDNSDTHHSGGS-----DIEMDEQILN-----RSKH 541

  Fly   115 LTQKISNPRWVVPVLPEQELEVLLNAAIELTQAGVDHDCEP-CVEFYRNGLSTSFAKILTDEAVN 178
            :.|::|:..           |.:..::.|...:|.|....| ....:.:|.|.........::..
 Frog   542 VQQRLSDTE-----------ESMQGSSDETANSGEDASSGPGSSSGHSDGSSNEVNSSHASQSAG 595

  Fly   179 SWKNNIHHCILVSCGKLLHLIAIHMQRDNPYLLDLLAIVFDPENKFNTFNAGRQPECFAAPDYIW 243
            |..:.:|                     :..::|:.|:..|.|...::.|..:            
 Frog   596 SPGSEVH---------------------SEDIVDMEAMKEDDEEDEHSINTAK------------ 627

  Fly   244 GQLDSNKMYARPPPEPKNARGWLVDLINRFGQLGGFDNLLERFNIGLELLKRNQNK----CTGKN 304
                                       ||..                ||.||....    |.|::
 Frog   628 ---------------------------NRVS----------------ELQKRKLESQAGICLGES 649

  Fly   305 ISVEGRVENGAQDNRLTLALIHSLLRPFGQCYELLMPATIAKYFMPTWNVVLDLLDSFT-DEELK 368
               :|.||.....|.....|:.:        .|.:.|.          :..:.:|||.: .||.:
 Frog   650 ---QGPVERSTTSNGSGKDLVFN--------SESVQPG----------DSRIRILDSCSHPEESE 693

  Fly   369 REVKPEGRNDYINGIVKSARLLASRLTGQEELIRDLEMFRLK----------------------- 410
            .::..|....:|.|.:.:....:....|  |.|.: |:|..:                       
 Frog   694 HDMAGEMSTSHIQGSIDTCIARSGDFLG--EAIGN-ELFNCRRFIGPQHHHHHHHHHHHHHHHHH 755

  Fly   411 ----------MILRLL----------QVSS--------FNGKMNAL-NEINKVLSSVAYFSHRSQ 446
                      |:..:|          |||:        |:|:.:.. .|:.::.|.....||..|
 Frog   756 HHHHHHHEGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQ 820

  Fly   447 PLPHCMPEDEMDWLTADRMAQWIKSSDVLGVVLKDSLHQPQYVE------KLEKIIRFLIKEQAL 505
            .||:      :..:..:.::|            ..|:|:.||..      .|:.:.:   |...|
 Frog   821 HLPN------LASIYHEHLSQ------------GPSVHKHQYNSNAMVDINLDNVCK---KGNTL 864

  Fly   506 TLD---DLDAVWRAQAGKHEAIVKNVHDLLAKLAWDFTPEQLDHLFEAFQASMTTANKRQRERLL 567
            ..|   |.||:..:     |.::.....||..|...||..|:                  |.|.:
 Frog   865 LWDLVQDDDAIHLS-----EGLINEAEKLLCSLVCWFTDRQI------------------RMRFI 906

  Fly   568 E-LIRRLAEDDKNGVMAQKVL-KLFWTLAHSQEVPPEVLDQALGAHVKILDYSCSQERDAQKTIW 630
            | .:..|| ::::.|::.::| |||.|.            |..|:              :..|.|
 Frog   907 EGCLENLA-NNRSVVVSLRLLPKLFGTF------------QQFGS--------------SYDTHW 944

  Fly   631 LDKCVDELKSGDGWVLPALRLIRDICCLYDTTTNHAQRTQTSTNRQQVIERLQNDYSLVILVTNS 695
            :..          |.                                     :.:.:::.|..::
 Frog   945 ITM----------WA-------------------------------------EKELNMMKLFFDN 962

  Fly   696 LTAYMEKVRQMVTDSPGLDATRILIDGR-----FPHHVQIAERLEFL----KFLLKDGQLWLCAD 751
            |..|::.:|                ||:     :.|..::..||:||    ..|.......|..:
 Frog   963 LVHYIQSIR----------------DGQHKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLE 1011

  Fly   752 QAKQIWHCLAVNAVFPADREECF----RWFGKLMGEEPDLDPGIN--KDFFENNILQLDPHLLTE 810
            |...:||||       .:..||:    .||...:..:.....|:.  |..|...:.||.|..::.
 Frog  1012 QVDILWHCL-------VEDTECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISM 1069

  Fly   811 SGIKCFERFFKAVNSKEDKLKAIHRGYMLDNEDLIGKDYLWRVIT---TGGEEIASKAIDLLKE- 871
            :|:..|:..   .|.......|...|   .|.:|.|.|..|.:..   ||  :::..||..:.. 
 Frog  1070 TGLNLFQHL---CNLARLATSAYDGG---SNSELCGMDQFWGIALRAHTG--DVSRAAIQYINSY 1126

  Fly   872 -VSTALGPRLQENIAEFHEMFIGECCSRLRTHYGNIVILGKTQLQEELDAPDQSDNTNDESKDSK 935
             ::...|      :.:.|| ||.:|...|.....|:                      ::...|.
 Frog  1127 YINGKTG------LEKEHE-FISKCMESLMIASSNL----------------------EQDSQSS 1162

  Fly   936 MRFIEAEKMCRILKVLQEYVKECDRSFS--------------------GDRVHLPLSRVTRGKNT 980
            :..||     |.|.:|:.:::...|.|:                    .|:..|||..|.:    
 Frog  1163 LTIIE-----RGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALNDKQSLPLRIVCQ---- 1218

  Fly   981 ILYIRFQNPGRSIDDMEIVTHSNETMAAFKRNLLKRIKGTSTANIKVDLFYANDEMIGVSDEINP 1045
                    |....|.|.|.                              .|.:|::..:..|:..
 Frog  1219 --------PAGLPDKMTIE------------------------------MYPSDQVADLRAEVTH 1245

  Fly  1046 LYQYTIRDKMNLTAKLTPVGTG----------------LASSPDSSSD----------------- 1077
            .|:...:|:||..|:|...|..                ::|..:.::|                 
 Frog  1246 WYENLQKDQMNQQAQLQEFGQSSRKGDFPGGLMGPVRMISSGHELTTDYDEKTLHELGFKDMQMV 1310

  Fly  1078 -SSTGSP-----------PRPC-PDMQRVESESTLPGVIISQNYQYTEFFLKLYQLGS------- 1122
             .|.|:|           |..| |..|:    ..:|.:::.|....:..|..|..|.|       
 Frog  1311 FVSLGAPRRERKGEGVQLPASCLPPPQK----ENIPMLLLLQEPHLSTLFGLLEMLASFKPPSGE 1371

  Fly  1123 ----DLEHGRLRD--------SAKV--LLHLL---------------------PCDRQTIRQLKI 1152
                |:||.|..:        |.:|  ||.||                     ||.:..:| :|.
 Frog  1372 MVMEDVEHARCEELHLHAENLSRRVWELLMLLPTCPNMLQAFQNVSDEQGSDGPCWKDLLR-IKS 1435

  Fly  1153 MCKVPKAAVTVAVTGDKIAKDEEEK------LYPTEQAGIEDEEEHC--TPEQMFLHPTPAQVLY 1209
            ..|:..|...:...|....:...|.      |||......||:.|:.  |....|:.....|.|.
 Frog  1436 AHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQIENSKNTWSCKFVAAGGLQQLI 1500

  Fly  1210 NLSVLHGLLIPALDPLGESALLVQSAW--MHSGCAHFVLELLTKNNFLPS--------------- 1257
            .: ...|:|.|.          .|.:|  ....|...:|:|:.:....|:               
 Frog  1501 EI-FNSGILEPK----------EQESWTVWQLDCLACLLKLICQFAVDPTDLDLAYHDVFAWSGV 1554

  Fly  1258 ADMHTKRA-------------SFQCVLRLAKLFLYIVGSVLSRVGDEPMICDLDNGSRSQVDILK 1309
            |:.|.|||             ....:.||.::||.:|                            
 Frog  1555 AESHRKRAWPGKSRKSAGEHPKGLHIPRLTEVFLVLV---------------------------- 1591

  Fly  1310 QNFSTMPSSSQGTLRAISAKLAVILAREMLSASPEGDRC--RTLFSSTLQWSCPDISTIKAVVQL 1372
                      |||          .|.:.::|.:...|..  |.|.:.:...|..:::.....:.:
 Frog  1592 ----------QGT----------CLIQRLMSVAYTYDNIAPRVLKAQSDHRSRHEVTHYSMWLLV 1636

  Fly  1373 AWASSCGNLQALGNSSGDFEDEVIVPDGQDFSMCKEALEVLTISFILNPSANEALTSDPNWPKFI 1437
            :||..|..:::....|.:.:|                                       |.|.:
 Frog  1637 SWAHCCSVVKSSLADSDNLQD---------------------------------------WLKKL 1662

  Fly  1438 TSIVLKNPLRHVRQVASEQLFLASTYCAGD--RRPFVYMV--NLL-----VGALKTL-VPQYEST 1492
            |.::.:..:||.......:|.| |....||  .|.|:.:.  .||     ..|||.: :..||..
 Frog  1663 TLLIPETAVRHEACNGLYKLSL-SGLDGGDSINRSFLLLAASTLLKFLPDAQALKPVRMEDYEEE 1726

  Fly  1493 ------CAEFFSVLCRTLSYGCIYNWPLQISEGLLGDEIKWLQRIRENVH---ATGDTQVHEELL 1548
                  |.|:|.:||:.:                            :|:|   |:..|.:..:.|
 Frog  1727 MILRPGCKEYFWLLCKLI----------------------------DNIHVKDASQTTLLDLDAL 1763

  Fly  1549 EGHL--CL-AKELMFF----LGADSKAQLNELIHELI---DDFLFT-ASREFLH-----LRRHGS 1597
            ..||  |: ::|:..:    :..|....|..|...:|   ..|.|: ..:|||.     |....|
 Frog  1764 ARHLADCIRSREIFDYQDGNVEDDGMTGLLRLATSVIKHKPPFKFSREGQEFLRDVFNLLFLLPS 1828

  Fly  1598 LRQDTVPPPVCRSPHTIAAACDLLIALCQLCVPNMKLLTNTLIDFVCTDTDPLREWDYLPPVGAR 1662
            |:...  .|.|:|..:.|||.|||:.:.:..|.|.:||.|.::......:....:|||.|....|
 Frog  1829 LKDKL--QPKCKSHSSRAAAYDLLVEMVKGSVENYRLLHNWVMAQHMQSSHAPYKWDYWPHDDVR 1891

  Fly  1663 PTKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFS 1727
            ....|.||.|.|||||:.|.:|||||:|..|                             .|:|:
 Frog  1892 AECRFVGLTNLGATCYLASTIQQLYMIPEAR-----------------------------QAIFT 1927

  Fly  1728 GPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEP 1792
            ...|                .|::   |...|..:|.:|.:|..|..:.|.||.....:.:..:|
 Frog  1928 AKYS----------------EDMK---HKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQP 1973

  Fly  1793 VNLREQQDAVEFFMSLLESLDEGLKALGQPQLMN---ATLGGSFSDQKICQECPHRYSKEEPFSV 1854
            :|..||:|..|||..|:..::|     ..|:|.|   :..||..::..:..:|.|.....|.|..
 Frog  1974 LNTGEQKDMTEFFTDLITKIEE-----MSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYT 2033

  Fly  1855 FSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDY 1919
            ....:.:..::.|||::....:.|||.:.|.|..|.|||...||.|.||||.:|:....|:.::.
 Frog  2034 VRCQVADMKNIYESLDEVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNM 2098

  Fly  1920 ERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNCQ--TNVETTKYELTGIVVHSGQA 1982
            ..:...|.|.:|.||..|||.|||...|......:....::|:  ...|:.:|:|.|:.||:|.|
 Frog  2099 VTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKNDRIEGFKEDCEEPKQTESYEYDLIGVTVHTGTA 2163

  Fly  1983 SGGHYFSYILS-KNP---ANGKCQWYKFDDGEVTECKMHEDEEMKAECFGGEYMGETYDNNLKRM 2043
            .||||:|:|.. .||   .|.|  ||.|:|.||   |..:..::.:||||||...:|||:...:.
 Frog  2164 DGGHYYSFIRDIVNPHAYKNNK--WYLFNDAEV---KPFDSAQLASECFGGEMTTKTYDSVTDKF 2223

  Fly  2044 QYRRQKRWWNAYMLFYTRCDQTPVQYEPSVEQLSLAESRNMVLPLPKPIERSVRHQNIRFLHSRS 2108
            .....::..:||||||.|       .||..|     ..|.....:...:...:.|.|::||..::
 Frog  2224 MDFSFEKTHSAYMLFYKR-------VEPEEE-----TGREFKFDVSSELLEWIWHDNMQFLQDKN 2276

  Fly  2109 IFSVEFFNFIKKLVSCNLLSARSNKITPAAEELSLLGVQLASQFLFHTGFRTKKSLRGPVMEWYD 2173
            ||...:|.|:.:|  |:.:.:    ..|..:.:||:..:|::.|:..|...:|:  :..:::|.:
 Frog  2277 IFEHTYFGFMWQL--CSSIPS----TLPDPKAVSLMTAKLSTSFVLETFIHSKE--KPTMLQWIE 2333

  Fly  2174 ALSHHIRSSALVRKWFANHALLSPPSRLG-------EYILMAPSPDVRTVFVKLVV--------F 2223
            .|:....:|....:||.:        |:.       :.::..|:..||.:|.:|.:        .
 Frog  2334 LLTKQFNNSQAACEWFLD--------RMADDDWWPMQILIKCPNQIVRQMFQRLCIHVIQRLRPV 2390

  Fly  2224 FCHFAIN----------DEPLTGYDGANLCEQVLISVLRLLKSEAADYGKHLPHYFSLFSMYVGL 2278
            ..|..:.          |.|:......:...:.:.::|.:::.....:.|||..||:....:|.:
 Frog  2391 HAHLYLQPGMEDGSDDMDGPVEDIGSRSCVTRFVKTLLSIMEHGVKPHSKHLTEYFAFLYEFVKM 2455

  Fly  2279 GTREKQQLLRLNVPLQFIQVAL-DDGP-GPAI-----------------------KYQYPEFSKL 2318
            |..|.|.||.|......:...: ..|| .|.:                       ||:.....|:
 Frog  2456 GEEESQFLLSLQAISTMVHFYMGTKGPENPQVEVLSEEEEGEEEEEEDILSLAEEKYRPAALEKM 2520

  Fly  2319 HQVVSHLIRCSDVSEKCQSSNQN 2341
            ..:::.|:..|. ||:..:.:||
 Frog  2521 IALIAFLVEQSR-SERHLTLSQN 2542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 124/406 (31%)
UCH 1668..2059 CDD:278850 120/399 (30%)
usp34XP_002939554.2 peptidase_C19C 1895..2244 CDD:239124 124/413 (30%)
FCP1_C <3324..3453 CDD:370422
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D625455at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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