DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment faf and usp47

DIOPT Version :9

Sequence 1:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster
Sequence 2:XP_031755561.1 Gene:usp47 / 100036690 XenbaseID:XB-GENE-5760041 Length:1374 Species:Xenopus tropicalis


Alignment Length:891 Identity:200/891 - (22%)
Similarity:333/891 - (37%) Gaps:256/891 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1529 QRIRENVHA-TGDTQVHEELLE--GHLCLAKELMFFLGADS---KAQLNELIHELIDDFLFTASR 1587
            :||..|:.| |...|::|::..  |::.....||:..||.:   .|.|:......:.:..|.|.:
 Frog    58 ERITLNLPASTSVKQLYEDVSSKAGYVSGTFSLMWGNGASNMVDMAALDPTPDRTLQEAGFEAGK 122

  Fly  1588 E-FLHLR-RHGSLRQDTVPPPVCRSPHTIAAACDLLIALCQLCVPNMKLLTNTLIDFV------- 1643
            : ||||. ::|.       .|...|..:..|             .:..|..:|...|:       
 Frog   123 KNFLHLTDKNGE-------QPQLTSDESGTA-------------DSSGLDDSTQEKFIGPLPREE 167

  Fly  1644 ---CTDTDPLREWDYLPPVGARPTKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATT 1705
               ||.....:.:.|...:....| |:.||.|...|||:||:||.|:|.|..|..:.:      .
 Frog   168 SVACTSDYVSQNYSYSSLLSKSDT-GYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYK------W 225

  Fly  1706 DGEDFSGDSDLTGGGLGSALFSGPASALVSLP------------SSSSTIEDGLHDVRKNYHVVI 1758
            :.|:...|               |.|   |:|            |....||  ..||.:::    
 Frog   226 EFEESEED---------------PVS---SIPYQLQRLFVLLQTSKKRAIE--TTDVTRSF---- 266

  Fly  1759 LKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNLREQQDAVEFFMSLLESLDEGLKALGQPQ 1823
                       |..:.:      .|             :|.|..|....:.::|::..|...|..
 Frog   267 -----------GWDSSE------AW-------------QQHDVQELCRVMFDALEQKWKQTEQAD 301

  Fly  1824 LMNATLGGSFSDQKICQECPHRYSKEEPFSVFSVDIRNHSSLT------ESLEQYVKGELLEGAD 1882
            |:|....|...|...|.||.:...:.:.|....:.||...|.|      |:|:.:::.|.|:|.:
 Frog   302 LINQLYQGKLKDYVKCLECGYESWRIDTFLDIPLVIRPFGSNTAFGSMEEALQAFIQPETLDGPN 366

  Fly  1883 AYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDYFEFPRILDMEPY----- 1942
            .|.|::|.:|....|.:.....|.:|.:|||||::||..:..||.||...||..|||.|:     
 Frog   367 QYFCERCKRKCDARKGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVED 431

  Fly  1943 ---------TVSGLAKLEG--------------EVVEVGDNCQTNVETTK-----------YELT 1973
                     |.|| |:.||              :.|:.|...:||....|           |||.
 Frog   432 EKSPQTDSCTDSG-AENEGSCHSDQMSNDFSTDDAVDEGICLETNSNIEKLNKSVSEKNSLYELF 495

  Fly  1974 GIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHEDEEMKAECFGGE-----YMG 2033
            .::||||.|:||||::.|  |:.|:|  |||.|:|..|:..   ..|::| :.:||.     |..
 Frog   496 SVMVHSGSAAGGHYYACI--KSFADG--QWYSFNDQHVSRI---TQEDIK-KTYGGSTGNRGYYS 552

  Fly  2034 ETYDNNLKRMQYRRQKRWWNAYMLFYTRCDQTPVQYEPSVEQLSLAESRNMVLPLPKPIERSVRH 2098
            ..:.::.            |||||.|..  :.|.:.....|.:...|  ::.|.:.|..|:..:.
 Frog   553 SAFASST------------NAYMLMYRL--KNPARNAKFPEAIEFPE--HIKLLVQKEQEQEEQE 601

  Fly  2099 QNIRFLHSRSIFSVEFF--NFIKKLVSCNLLSARSNKITPAAEELS-----LLGV------QLAS 2150
            :..|.: .|:...::.|  :.:|:::..:.|....:|....|.|::     |.||      :|..
 Frog   602 KRQREI-ERNTCKLKLFCMHPVKQIMMESKLEVHKDKTMKEAVEIAHKLMDLEGVISLDCCRLVK 665

  Fly  2151 QFLFHTGF---------RTKKSLRGPVMEWY--DALSHHIRSSALVRKWFANHAL---------- 2194
            ...||...         ||...|.|.|...|  |.|....|...:.:.:.....:          
 Frog   666 YDEFHDYLERSYEDEEDRTMGYLLGGVKSSYMFDLLLETKRPDQVFQSYKPGEVMVKVYVVDLKT 730

  Fly  2195 --LSPPSRLGEYI---------LMAPSPDVRTVFVKLVVFFCHFAINDEPLTGY-------DGAN 2241
              ::||..:..|:         |::.|.|:....:::|:..|:   ||..|...       :|..
 Frog   731 ETVAPPVSVRAYLSQTIIEFKQLISKSVDLLPDTMRVVLERCY---NDLRLLNVANKTLKAEGFF 792

  Fly  2242 LCEQVLISVLRLLKSEAADY---------GKHLPHYFSLFSMYVGL 2278
            ...:|.:.     .|::.||         .|.|..:.:...:||.|
 Frog   793 RSNKVFVE-----SSDSLDYQLVFTDSHLWKLLDRHANTIRLYVSL 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 119/459 (26%)
UCH 1668..2059 CDD:278850 117/452 (26%)
usp47XP_031755561.1 peptidase_C19C 192..571 CDD:239124 119/461 (26%)
MSCRAMM_ClfB <834..1029 CDD:411414 200/891 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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