DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and HRD1

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_014630.1 Gene:HRD1 / 854149 SGDID:S000005373 Length:551 Species:Saccharomyces cerevisiae


Alignment Length:434 Identity:95/434 - (21%)
Similarity:182/434 - (41%) Gaps:126/434 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVCMALTSAVIGFAYYQKQQFYPAVVYIT-KSNASMGVIYIQFFVIV--FMFGKLLSKIFLGTLR 68
            ::.:.:|..:..:..|...:...:.:.:| |.|....::.:..|:::  .:..:||:|:..|.||
Yeast    11 AIFVVVTYLLTFYCVYSATKTSVSFLQVTLKLNEGFNLMVLSIFILLNSTLLWQLLTKLLFGELR 75

  Fly    69 AAEFEHLLERFWYALTETCLAFTVFRDDFNPRFVALFTV------LLFLKSFHWLAEERVDFM-- 125
            ..|.||:.||..:.:..|....::|.:.:      .|||      ||:||.|||:.::|::.:  
Yeast    76 LIEHEHIFERLPFTIINTLFMSSLFHERY------FFTVAFFGLLLLYLKVFHWILKDRLEALLQ 134

  Fly   126 --ERSPVLGWLFHIRVGSLLTVLGILDYVLL------IHAYNSTLVRGPTVQLVFGFEYAI---- 178
              ..|..:..|...|....|.:|.::||.::      |:....:.:...::.|:...|:.:    
Yeast   135 SINDSTTMKTLIFSRFSFNLVLLAVVDYQIITRCISSIYTNQKSDIESTSLYLIQVMEFTMLLID 199

  Fly   179 LLTVIASTAIKY----------------VLHA------------------------AEMRTDTPW 203
            ||.:...|.:.:                ::|.                        .:.|..|..
Yeast   200 LLNLFLQTCLNFWEFYRSQQSLSNENNHIVHGDPTDENTVESDQSQPVLNDDDDDDDDDRQFTGL 264

  Fly   204 ENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI--------------RNFR 254
            |.|.::....::....:|..|::..::    .:.:||.:.:.:.:.|              || .
Yeast   265 EGKFMYEKAIDVFTRFLKTALHLSMLI----PFRMPMMLLKDVVWDILALYQSGTSLWKIWRN-N 324

  Fly   255 KALNDVIMSRRAIRNMNTLYPDATPEELRQS---DNICIICREDMVNHS-------------KKL 303
            |.|:|.:::             .|.|:|:.|   |||||||.:::: ||             |:|
Yeast   325 KQLDDTLVT-------------VTVEQLQNSANDDNICIICMDELI-HSPNQQTWKNKNKKPKRL 375

  Fly   304 PCGHIFHTTCLRSWFQRQQTCPTCRL-------NILRTP-TVNS 339
            |||||.|.:||::|.:|.||||.|||       |:::|. |.||
Yeast   376 PCGHILHLSCLKNWMERSQTCPICRLPVFDEKGNVVQTTFTSNS 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 94/421 (22%)
zf-RING_2 287..328 CDD:290367 24/53 (45%)
HRD1NP_014630.1 HRD1 5..551 CDD:227568 95/434 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343581
Domainoid 1 1.000 59 1.000 Domainoid score I2599
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 102 1.000 Inparanoid score I1443
Isobase 1 0.950 - 0 Normalized mean entropy S1478
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004154
OrthoInspector 1 1.000 - - oto99513
orthoMCL 1 0.900 - - OOG6_102274
Panther 1 1.100 - - LDO PTHR22765
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6571
SonicParanoid 1 1.000 - - X2905
TreeFam 00.000 Not matched by this tool.
1312.770

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