DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and AT5G66070

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_001032158.1 Gene:AT5G66070 / 836739 AraportID:AT5G66070 Length:245 Species:Arabidopsis thaliana


Alignment Length:260 Identity:58/260 - (22%)
Similarity:89/260 - (34%) Gaps:97/260 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 FHIRVGSLL----------------TVLGILDYVLLIHAYNSTLVRGPTVQLVFG-------FEY 176
            ||..|.:||                |:||.|...|:.....|..:||..|..:.|       ||.
plant    20 FHFAVSALLANLFSALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFES 84

  Fly   177 AILLTVIASTAIKYVLHAAEMRTDTPW---ENKAVFLLYTELVIGLIKVVLYIL----------- 227
            ::||                      |   |:....|||      ||.|:..:|           
plant    85 SLLL----------------------WQSDESGIGCLLY------LIDVIASLLSGRLVRERIGP 121

  Fly   228 --FVVIMAKIYALPMFVFRPMFFTIRNF---RKALN-------------DVIMSRRAIRNMNTLY 274
              ...:.::: .||...|...|..:.||   .|.:.             |..:|:....:.....
plant   122 AMLSAVQSQV-QLPFLFFDASFIILLNFCINNKQMGAVESQFQDHTDIFDTAISKGLTGDSLNRI 185

  Fly   275 P-----DATPEELRQSDNICIICRED-MVNHS-KKLP-CGHIFHTTCLRSWFQRQQTCPTCRLNI 331
            |     |.:||.:.     |.:|.:| .|..: :.|| |.|:||..|:..|.:|..:||.||.::
plant   186 PKVRITDTSPEIVS-----CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 245

  Fly   332  331
            plant   246  245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 58/260 (22%)
zf-RING_2 287..328 CDD:290367 15/43 (35%)
AT5G66070NP_001032158.1 Gly-zipper_YMGG 41..76 CDD:290177 10/34 (29%)
zf-RING_2 199..242 CDD:290367 15/47 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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