DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and AT5G60820

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_200890.1 Gene:AT5G60820 / 836203 AraportID:AT5G60820 Length:419 Species:Arabidopsis thaliana


Alignment Length:74 Identity:21/74 - (28%)
Similarity:40/74 - (54%) Gaps:7/74 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 SRRAIRNMNTLYPDATPEELRQSDN---ICIICREDMV--NHSKKLPCGHIFHTTCLRSWFQRQQ 322
            |:..|:|:..  ...:.|::.::|:   .|.:|:|:|:  ....:|||.|.:|:.|:..|...:.
plant   345 SKSFIKNLKV--SPLSNEDVMENDDDAVCCAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRN 407

  Fly   323 TCPTCRLNI 331
            |||.||..:
plant   408 TCPVCRFEL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 21/74 (28%)
zf-RING_2 287..328 CDD:290367 14/45 (31%)
AT5G60820NP_200890.1 RING-H2_RNF126_like 372..413 CDD:319581 14/40 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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