DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and NIP2

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_001189544.1 Gene:NIP2 / 816282 AraportID:AT2G17730 Length:253 Species:Arabidopsis thaliana


Alignment Length:254 Identity:54/254 - (21%)
Similarity:96/254 - (37%) Gaps:65/254 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 DFMER---------SPVLGWL-------FHIRVGSLLTVLGILDYVLLIHAYNSTLVRGPTVQLV 171
            :|:||         |.|||.:       |...||   |:||.|...|:.....|..:||..:..:
plant    26 NFVERIKDACHFLVSAVLGTIISAILTFFFALVG---TLLGALTGALIGQETESGFIRGAAIGAI 87

  Fly   172 FGFEYAILLTVIASTAIKYVLHAAEMRTDTPWENK----AVFLLYTELVIGLIKVVLY------I 226
            .|..::|              ...|...|. |::.    ..||...::::.|:...|.      .
plant    88 SGAVFSI--------------EVFESSLDL-WKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPA 137

  Fly   227 LFVVIMAKIYAL-PMFVFRPMFFTIRNFRKALNDVI--MSRRAIR-NMNTLYPDATPEELRQSDN 287
            :...:.:::.|: ..|......|.....:....|::  :.:..|. |.||   ||:     ::.:
plant   138 MLSAVQSQMGAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNT---DAS-----ENTD 194

  Fly   288 ICIICRED--MVNHSKKLP-CGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMP 343
            .|.:|.:|  :....:.|| |.|:||..|:.:|..|..      ::..||..|.|..:|
plant   195 SCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHD------ISTARTSRVCSALLP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 54/254 (21%)
zf-RING_2 287..328 CDD:290367 12/43 (28%)
NIP2NP_001189544.1 Gly-zipper_OmpA <56..>90 CDD:290172 10/36 (28%)
zf-RING_2 194..231 CDD:290367 11/36 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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