DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and Rnf149

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_001028307.2 Gene:Rnf149 / 67702 MGIID:2677438 Length:394 Species:Mus musculus


Alignment Length:192 Identity:45/192 - (23%)
Similarity:76/192 - (39%) Gaps:42/192 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 ELVIGLIKVVLYILFVVIM------AKIYALPMFVFRPMFFTIRNFRKALNDVIMSRRAIRNMNT 272
            |.:.|...|.:.|.|:.:|      ...|.:..|::....|..:|.||....||..         
Mouse   190 EFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQNHRKETKKVIGQ--------- 245

  Fly   273 LYPDATPEELRQSDNI----CIICRE-----DMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCR 328
             .|..|.:...:..::    |.:|.|     |::   :.|||.||||..|:..|....:|||.|:
Mouse   246 -LPLHTVKHGEKGIDVDAENCAVCIENFKVKDVI---RILPCKHIFHRICIDPWLLDHRTCPMCK 306

  Fly   329 LNILRTPTVNSTAMPRQGDEAVAAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNV 390
            |::::       |:...||.........| .||.|....|.:      :|...::.|::.|:
Mouse   307 LDVIK-------ALGYWGDPEDTQELPTP-EAAPGRVSVGNL------SVTSQDEERSESNL 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 41/165 (25%)
zf-RING_2 287..328 CDD:290367 16/49 (33%)
Rnf149NP_001028307.2 PA_GRAIL_like 45..181 CDD:239037
UPF0233 <193..>220 CDD:299753 6/26 (23%)
zf-RING_2 263..306 CDD:290367 16/45 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 321..394 8/41 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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