DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and rnf-145

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_491382.2 Gene:rnf-145 / 172053 WormBaseID:WBGene00022471 Length:742 Species:Caenorhabditis elegans


Alignment Length:437 Identity:97/437 - (22%)
Similarity:167/437 - (38%) Gaps:140/437 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 ITKSNASMGVIYIQFFVIVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFN 98
            ||.:..::.|.|:..::..      |:|:..|..|:  ..|:|....|  ||             
 Worm   331 ITLAALAVSVSYVCKWIAD------LTKLITGGTRS--HGHVLAHSGY--TE------------- 372

  Fly    99 PRFVALFTVLLFLKS-FHWLAEERVDFMERSPVLGWLFHIRVGSLL-TVLGILDYVLLIHAYNST 161
                |:..|:|.::: |..:..|     :::.:|..:.:|.:.:|| ::..|::.|||....:.|
 Worm   373 ----AVSVVILCIQTGFLGMQVE-----QKTILLALVLYIVISALLQSLFEIIEVVLLNLPSSPT 428

  Fly   162 LVRGPTVQLVFGFEYAILLTV----------------------IASTA----------IKYVLHA 194
            ..|....:.:.   .|:||.|                      ||::|          :||::..
 Worm   429 ASRARHARCIC---IALLLVVIPFFTTKTMLALLPIDIYTAIIIANSATVTARAIGVILKYIVLI 490

  Fly   195 AEMRTDTPWE------------NKAVFLLYTE--LVIGLIKVV----LYILFVVIMAKIYALPMF 241
            .|.:::.|||            ||.:.||..:  :|.|.::||    .:..|.::          
 Worm   491 VETKSEEPWEGIDDLTYYIDCANKGIELLAAKVVMVFGCMQVVKVGFSFATFAIL---------- 545

  Fly   242 VFRPMFFTIRNFRKALNDVIM----SRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKK 302
                :|..|.|..|.|...:.    ...|::|:|.| ..|...:||:.:::|.||..:|...::.
 Worm   546 ----LFHVIVNIYKRLEHTVSFIKNRNAAVKNINRL-SKADVVQLREREDVCAICFIEMKEEARI 605

  Fly   303 LPCGHIFHTTCLRSWFQRQQTCPTCRLNILR---------TPTVNSTAMPRQGDEAVAAAAGNPI 358
            .||.|.||..|||.|...:..||.|...:..         :.|:|..    |.:|..||...|| 
 Worm   606 TPCKHYFHGPCLRKWLAVKMVCPLCYTYMKEDDFDSKSSSSGTLNEV----QQNEEGAAVEENP- 665

  Fly   359 PAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNFADLFG 405
                 ..|.  ..|.||.|    .:|..|:.         ::.||||
 Worm   666 -----ENPE--EQPEAPNA----ERAPGDMF---------DWDDLFG 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 86/395 (22%)
zf-RING_2 287..328 CDD:290367 15/40 (38%)
rnf-145NP_491382.2 TRC8_N 49..556 CDD:372682 53/273 (19%)
RING-H2_RNF139_like 590..631 CDD:319390 15/40 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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