DRSC/TRiP Functional Genomics Resources

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Protein Alignment sip3 and syvn1

DIOPT Version :9

Sequence 1:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster
Sequence 2:XP_012816157.1 Gene:syvn1 / 100327246 XenbaseID:XB-GENE-1005361 Length:608 Species:Xenopus tropicalis


Alignment Length:636 Identity:300/636 - (47%)
Similarity:408/636 - (64%) Gaps:67/636 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFVIVFMFGKLLSKIFLGTLR 68
            :::...:|||:||:..||:.|.||||.|||:|||:.||.|:|||.||:||:.||.:.|:|.|.||
 Frog     5 VMTGASLALTAAVVAHAYFLKNQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKFMGKVFFGQLR 69

  Fly    69 AAEFEHLLERFWYALTETCLAFTVFRDDFNPRFVALFTVLLFLKSFHWLAEERVDFMERSPVLGW 133
            |||.||||||.|||:||||||||||||||:||||||||:|||||.||||||:|||||||||.:.|
 Frog    70 AAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERSPNISW 134

  Fly   134 LFHIRVGSLLTVLGILDYVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMR 198
            |||.|:.:|:.:||:||...:.|||:|.:.||.:||||||||||||:|:|.:..||||||:.:::
 Frog   135 LFHFRILALMLLLGVLDAFFVSHAYHSLVTRGASVQLVFGFEYAILMTMILTVFIKYVLHSVDLQ 199

  Fly   199 TDTPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTIRNFRKALNDVIMS 263
            ::.||:||||::|||||:.|.|||:||:.|:.||.|::..|:|..|||:..:|.|:||:.|.|||
 Frog   200 SENPWDNKAVYMLYTELLTGFIKVLLYMAFMTIMVKVHTFPLFAIRPMYLAMRQFKKAVTDAIMS 264

  Fly   264 RRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCR 328
            |||||||||||||||.|||:..||:||||||:||..:|:|||.|||||:||||||||||||||||
 Frog   265 RRAIRNMNTLYPDATTEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 329

  Fly   329 LNILRT--PTVNSTAMPRQGD-EAVAAAAGNPI----------------PAAAGVQPAGGVPPPA 374
            :::||.  ||...|...:|.. :..|.....|:                |....:.|..|..||.
 Frog   330 MDVLRASLPTQPQTPADQQNQHQNQAPQQQTPVIPPQPNFPPGILPPFPPGMFPLWPPMGPFPPV 394

  Fly   375 PTAVVDGN---QARADVNVAGGQALPPNFADLFGDASGLPNGLPNLAGLQIPPPPV-MPMISPFM 435
            |.| ..||   :|....:.||....|...:::..|:.  |:.  .|.|...|||.: ||::.||.
 Frog   395 PGA-PGGNPPDEANPGPSTAGPSPRPGETSNVGSDSQ--PSA--TLPGFPFPPPFLGMPILPPFG 454

  Fly   436 IPPHFGYLTPLPPPPIPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS 500
            :||     .|:|    |...|..||||||||||.:|.::..||:.||||:.:||:|.:.::||.:
 Frog   455 LPP-----MPMP----PAGFTGLTDEELRAMEGHERQNLEARLQCLQNIHTLLDAAMLQINQYLT 510

  Fly   501 LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTP--TAAASSASPTMPAEKVTI 563
            :.|.:.    .|...|..::.:|....|:||..      :..|.|  ||||::.:.|.|:::   
 Frog   511 VLASIG----PPQPPVPSTSAASASTEPTTSNV------SEPVIPKDTAAAATVTSTEPSQQ--- 562

  Fly   564 EDLGADADEDDIPSTATEAVSIPNSDADFEENSSE---LGELRKRRLKFLE 611
                      ..|...:...::  |..:.||.::|   ..|||:|||:.||
 Frog   563 ----------SAPPAPSNVETV--SGEEVEETTTEEPDTVELRRRRLQKLE 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 216/363 (60%)
zf-RING_2 287..328 CDD:290367 32/40 (80%)
syvn1XP_012816157.1 HRD1 25..>344 CDD:227568 209/318 (66%)
PRK14950 <468..>575 CDD:237864 38/131 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 389 1.000 Domainoid score I790
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 540 1.000 Inparanoid score I1155
OMA 1 1.010 - - QHG56438
OrthoDB 1 1.010 - - D271732at33208
OrthoFinder 1 1.000 - - FOG0004154
OrthoInspector 1 1.000 - - oto103533
Panther 1 1.100 - - LDO PTHR22765
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6571
SonicParanoid 1 1.000 - - X2905
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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