DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smvt and Slc5a10

DIOPT Version :9

Sequence 1:NP_651891.2 Gene:Smvt / 43744 FlyBaseID:FBgn0039873 Length:591 Species:Drosophila melanogaster
Sequence 2:NP_001100477.1 Gene:Slc5a10 / 303205 RGDID:1305232 Length:596 Species:Rattus norvegicus


Alignment Length:569 Identity:132/569 - (23%)
Similarity:242/569 - (42%) Gaps:83/569 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PDSQFVFNATDYGVFALVLSISAAIGVYFGFFAKGEDTTEEYLMGGKRMKTIPIAISLVASQLSA 82
            |.||  .:.:|..|.:|..:::.|:||:....| .::|...|.:.|:.|...||..||.||...:
  Rat    12 PGSQ--LSTSDIIVISLYFALNVAVGVWTACRA-NKNTVSGYFLAGRDMAWWPIGASLFASSEGS 73

  Fly    83 ISIMTIPAEMYAYGI---NWVFNVVCMVLVVPLLNYLVIPVFYNNNITNCYEYLEMRF-CRKVRV 143
            ...:.:.....|.|:   .:.:|...::|.   |.::.:|::.::.|....||::.|| .:::|:
  Rat    74 GLFIGLAGSGAAGGLAVAGFEWNATYVLLA---LAWVFVPIYVSSEIVTLPEYIQKRFGGQRIRM 135

  Fly   144 -LQTFIFILTMFFMLPIFIFLPSLAFAQVTGFNVHLINTVVCSICVFYTMFGGIKAVVWTDVIQA 207
             |.....:|::|..:.|.::..:|......|:|.:|...:..:|...||:.||:..|::||.:|.
  Rat   136 YLSVLSLLLSVFTKISIDLYAGALFVHICLGWNFYLSTILTLAITALYTIAGGLATVIYTDALQT 200

  Fly   208 AIMVASVVLVGVLGAHRVGGFFEVLRIAGEGG--------------RLDINYNF-DLTTRSTIWN 257
            ||||...|::.|...:::|| :|.|..|....              |.|..:.| |.:|....|.
  Rat   201 AIMVVGAVILAVKAFNQIGG-YEQLEAAYAQATPSRTIPNTTCHLPRADAMHMFRDPSTGDLPWT 264

  Fly   258 IFT-SATMMWTGYVGLNQSCVQRIVSLPSLGHARRSLVLFGF------------GFILIMFFNCF 309
            ..| ..|:|.|.|...:|..|||.:|..:|.||:...:|..:            |.|..:.|...
  Rat   265 GMTFGLTIMATWYWCTDQVIVQRSLSARNLNHAKAGSILASYLKMLPMGLMIMPGMISRVLFPDD 329

  Fly   310 TGIVIYSRFHDCDPIQSGHVSKVDKMVPYFVQDTVGNLWGMPGVFISCVFSAALSTLSASINSLG 374
            .|.|:.|   :|.......:...:...|..|.:.:.  .|:.|:.|:.:.:|.||:|::..||..
  Rat   330 VGCVVPS---ECLRACGAEIGCSNIAYPKLVMELMP--IGLRGLMIAVMMAALLSSLTSIFNSSS 389

  Fly   375 GVVYFD---YIKPHIRHTEHRANVIMKLFVFFTGIYCILGGM------VIENFNSILQVIY--SI 428
            .:...|   ..:|.....|        |.:....:..:|.|:      |::..||....||  |:
  Rat   390 TLFTMDIWRQFRPGAGERE--------LLLVGRLVIVVLVGVSVAWIPVLQGSNSGQLFIYMQSV 446

  Fly   429 GGMSFGSTCGVFMLGMLVPKSHGRAALVGVLASIACMATIVILS--WGRNHYDTLPTSTSACPAS 491
            ..........:|:||:...:::.:.|..|::|.:...|..::|.  :...|...:.|.    |..
  Rat   447 TSSLAPPVTAIFLLGIFWRRANEQGAFWGLMAGLLVGALRLVLEFLYPEPHCGQIDTR----PFP 507

  Fly   492 LNGTIKDISTASPLFL--------GSTTEAPVGEKEFSILDLSFNWYTV 532
            | |:|..:..|..||.        ||....|..:::..    :..|:|:
  Rat   508 L-GSIHYLHFAIALFFLTCAVMAAGSLLSPPPQQRQIE----NLTWWTL 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmvtNP_651891.2 SLC5sbd_NIS-SMVT 27..548 CDD:271383 129/560 (23%)
Slc5a10NP_001100477.1 SLC5-6-like_sbd 17..596 CDD:294310 129/562 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340176
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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