DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smvt and Slc5a4

DIOPT Version :9

Sequence 1:NP_651891.2 Gene:Smvt / 43744 FlyBaseID:FBgn0039873 Length:591 Species:Drosophila melanogaster
Sequence 2:NP_001099853.1 Gene:Slc5a4 / 294341 RGDID:1306923 Length:671 Species:Rattus norvegicus


Alignment Length:656 Identity:129/656 - (19%)
Similarity:256/656 - (39%) Gaps:144/656 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSLLNATVLATAATVVPDSQFVFNATDYGVFALVLSISAAIGVYFGFFAKGEDTTEEYLMGGKR 65
            |:|..:.:....::.:...|..:.|..|..|..:...:..|:||: ........|...:.:.|:.
  Rat    12 MASTASVSTSTGSSELSSLSDNINNPADISVIVIYFVVVMAVGVW-AMVKTNRSTVGGFFLAGRS 75

  Fly    66 MKTIPIAISLVASQLSAISIMTIPAEMYAYGIN-WVFNVVCMVLVVPLLNYLVIPVFYNNNITNC 129
            |...|:..||.||.:.:...:.:.....|.||. ..|......|:: :|.:..:|::....:...
  Rat    76 MTWWPMGASLFASNIGSGHFVGLAGTGAATGIAVTAFESHSFALLL-VLGWFFVPIYIKAGVMTM 139

  Fly   130 YEYLEMRFCRKVRVLQTFIFILTMFFMLPIF----IFLPSLAFAQVTGFNVHLINTVVCSICVFY 190
            .|||..||..|  .||.::.:|::|..:.:.    ||..::......|.:::|...::.:|...:
  Rat   140 PEYLRKRFGGK--RLQIYLSVLSLFICVILTISADIFSGAIFIKLALGLDLYLAIFILLAITAVF 202

  Fly   191 TMFGGIKAVVWTDVIQAAIMVASVVLVGVLGAHRVGG-------FFEVLRIAGEGGRLDIN---Y 245
            |:.||:.:|::||.:||.||:....::.:.....|||       :...:....||..|.|:   |
  Rat   203 TITGGLASVIYTDTLQAIIMLVGSFILMIYAFVEVGGYESFTEKYMNAIPSVVEGDNLTISPKCY 267

  Fly   246 NFDLTTRSTIWNIFTSA----------------TMMWTGYVGLNQSCVQRIVSLPSLGHARRSLV 294
                |.:...::||..|                |.:|  |..:||..|||.:...::.|.:.:.:
  Rat   268 ----TPQPDSFHIFRDAVTGDIPWPGTAFGMPITALW--YWCINQVIVQRCLCGKNMSHVKAACI 326

  Fly   295 LFGFGFILIMFFNCFTGI---VIYSRFHDC-DPIQSGHVSKVD-------------KMVPYFVQD 342
            :.|:..:|.:||....|:   ::|:....| .|.:......||             |::|     
  Rat   327 VCGYLKLLPIFFMVMPGMISRILYTDMVACVVPSECVKQCGVDVGCTNYAYPMLVLKLMP----- 386

  Fly   343 TVGNLWGMPGVFISCVFSAALSTLSASINSLGGVVYFD-YIKPHIRHTEHRANVIMKLFVFFTGI 406
                 .|:.|:.:|.:.::.:|:|::..||...:...| |.|...:.:|....:..:|||....:
  Rat   387 -----MGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKIRKKASERELLIAGRLFVSVLIV 446

  Fly   407 YCILGGMVIENFNSILQVIYSIGGMSFGST-----------CGVFMLGMLVPKSHGRAALVGVLA 460
            ..||...::|         .|.||.....|           ..||::.:...:.:.:.|..|::.
  Rat   447 TSILWVPIVE---------VSQGGQLIHYTEAISSYLGPPIAAVFLVAIFCKRVNEQGAFWGLMV 502

  Fly   461 S--IACMATIVILSWGRNHYDTLPTSTSACPASLNGTIKDISTASPLFLGSTTEAPVGEKEFSIL 523
            .  :..:..|...|:|....    .:.|:||..:.|                             
  Rat   503 GLVLGLIRMIAEFSYGTGSC----LAPSSCPKVICG----------------------------- 534

  Fly   524 DLSFNWYTVTGFVITWLIGIPLSYILKSGPDYKPNPKLLSPVVQPFVH-YKLTPS---DEPHQLN 584
             :.:.:|.:..|.::.|:.:.:||:.|..||               || |:|..|   .|..:::
  Rat   535 -VHYLYYAIILFFVSILVILGVSYLTKPIPD---------------VHLYRLCWSLRNSEEERID 583

  Fly   585 LEKPEK 590
            |:..::
  Rat   584 LDAEDR 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmvtNP_651891.2 SLC5sbd_NIS-SMVT 27..548 CDD:271383 114/582 (20%)
Slc5a4NP_001099853.1 SLC5-6-like_sbd 38..671 CDD:294310 125/630 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340187
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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