DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smvt and LOC100488353

DIOPT Version :9

Sequence 1:NP_651891.2 Gene:Smvt / 43744 FlyBaseID:FBgn0039873 Length:591 Species:Drosophila melanogaster
Sequence 2:XP_002936886.2 Gene:LOC100488353 / 100488353 -ID:- Length:606 Species:Xenopus tropicalis


Alignment Length:588 Identity:208/588 - (35%)
Similarity:308/588 - (52%) Gaps:61/588 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VFNATDYGVFALVLSISAAIGVYFGFFAKGEDTTEEYLMGGKRMKTIPIAISLVASQLSAISIMT 87
            :|:..||.|||.||.|||.||:|:.|..:.::|::|:|.||:.|..:|:|:||.||.:||::::.
 Frog     9 LFSPWDYVVFAAVLLISAVIGIYYAFAGRRKNTSQEFLTGGRSMSALPVALSLTASFMSAVTVLG 73

  Fly    88 IPAEMYAYGINWVFNVVCMVLVVPLLNYLVIPVFYNNNITNCYEYLEMRFCRKVRVLQTFIFILT 152
            .||::|.:|..:.......|.||.:...:.:||||..|||:.|||||:||.:.||:|.|.|||:.
 Frog    74 TPADVYRFGAIYSMFAFSYVFVVIICAEIFLPVFYRLNITSTYEYLELRFNKCVRILGTVIFIIE 138

  Fly   153 MFFMLPIFIFLPSLAFAQVTGFNVHLINTVVCSICVFYTMFGGIKAVVWTDVIQAAIMVASVVLV 217
            |.....|.|:.|:||..||:|||:....|....:|.||...||||||:||||.|..||||..:.|
 Frog   139 MVLYTGIVIYAPALALNQVSGFNLWGAMTATGLVCTFYCTLGGIKAVIWTDVFQIVIMVAGFIAV 203

  Fly   218 GVLGAHRVGGFFEVLRIAGEGGRLDINYNFD--LTTRSTIWNIFTSATMMWTGYVGLNQSCVQRI 280
            .:.|....||...::..:..||||:. ::||  ...|.|.|.|....|.:|.|..|:|||.|||.
 Frog   204 IIRGVVVQGGIQTIINDSYYGGRLNF-WDFDPQPLRRHTFWTIVIGGTFLWVGIYGVNQSQVQRY 267

  Fly   281 VSLPSLGHARRSLVLFGFGFILIMFFNCFTGIVIYSRFHDCDPIQSGHVSKVDKMVPYFVQDTVG 345
            :|..:.|.|:.||.:...|.::|:......|:::||.:.||||..|..:|..|:::||.|.|.:.
 Frog   268 ISCKTKGQAKLSLYINLIGLMIILACAVLCGLILYSVYKDCDPWTSQIISAPDQLMPYLVLDILQ 332

  Fly   346 NLWGMPGVFISCVFSAALSTLSASINSLGGVVYFDYIKPHIRHTEHRANVIMKLFVFFTGIYCIL 410
            ...|:||:|::|.:|..|||:|:|||:|..|...|.|||:...:|::.:.|.|......||.||.
 Frog   333 GYPGVPGLFVACAYSGTLSTVSSSINALAAVTVEDLIKPYTHLSENKLSWISKGMSALYGILCIA 397

  Fly   411 GGMVIENFNSILQVIYSIGGMSFGSTCGVFMLGMLVPKSHGRAALVGVL--ASIACMATIVILSW 473
            ...|.....|::|...||..|..|...|:|.||:..|..:...|:||:|  .|::..|.|     
 Frog   398 MAAVASFMGSVIQAALSIFAMVGGPLLGLFSLGLFFPFCNSVGAIVGLLFGFSMSLWAGI----- 457

  Fly   474 GRNHYDTLPTSTSACPASLNGTIKDISTASPLFLGSTTE---------APVGEKEFSIL-----D 524
            |...|..||..:...|.|:.|.  :.||....:...|||         .|:...|..:|     .
 Frog   458 GAQIYPPLPERSRPLPLSIAGC--NFSTMDTNWTSMTTEPTMAMVTNLIPLDTSERPVLADYWYS 520

  Fly   525 LSFNWYTVTGFVITWLIGIPLSYILKSG-------PDY--------------------------K 556
            ||:.:::..|.::|.|:|:.:|  |.||       .||                          |
 Frog   521 LSYLYFSTLGTIVTILVGVIVS--LMSGGLKQSINHDYLFGRQDFSCDIFSCRKSEKDAKDLWPK 583

  Fly   557 PNP 559
            |||
 Frog   584 PNP 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmvtNP_651891.2 SLC5sbd_NIS-SMVT 27..548 CDD:271383 198/538 (37%)
LOC100488353XP_002936886.2 SLC5-6-like_sbd 10..550 CDD:382020 202/549 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489472at33208
OrthoFinder 1 1.000 - - FOG0000151
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR42985
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X112
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.020

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