DRSC/TRiP Functional Genomics Resources

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Protein Alignment nero and LIA1

DIOPT Version :9

Sequence 1:NP_651887.1 Gene:nero / 43740 FlyBaseID:FBgn0261479 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_012604.1 Gene:LIA1 / 853534 SGDID:S000003831 Length:325 Species:Saccharomyces cerevisiae


Alignment Length:310 Identity:144/310 - (46%)
Similarity:197/310 - (63%) Gaps:20/310 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VSQQQIEAIGGVLNNK--ERPLKERFRALFTLKNIG---------GGAAIEAISKAF-DDDSALL 54
            |.:..:|.:..:|.||  :..|..||||||.||.:.         ...|||.|:::| :|.|.||
Yeast    13 VDECTLEQLRDILVNKSGKTVLANRFRALFNLKTVAEEFATKPEEAKKAIEYIAESFVNDKSELL 77

  Fly    55 KHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEE-YKQDPVVEV 118
            |||:||.|||.::..|...|..|:.|..||||||||||||:||:|..|.|..|.: .|:||.|.|
Yeast    78 KHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDLNKAAKEDPHVAV 142

  Fly   119 AETCAIALDRVRWLQSGQKVDDSN----PYASVDPSPPTAGDKSVT--ELKAIYLDAQQSLFDRY 177
            .|||.:|::|:.|...|.| |..|    .|:|:||:||...:|..|  ||:|:..|.:|.||.||
Yeast   143 RETCELAINRINWTHGGAK-DKENLQQSLYSSIDPAPPLPLEKDATIPELQALLNDPKQPLFQRY 206

  Fly   178 RAMFSLRNLRTEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHE 242
            ||||.||::.|:|::||:|.|....|:||:||:|:|.||:..|.::|.|.|.|..:.|..|||||
Yeast   207 RAMFRLRDIGTDEAILALATGFSAESSLFKHEIAYVFGQIGSPAAVPSLIEVLGRKEEAPMVRHE 271

  Fly   243 CAEALGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYA 292
            .||||||||:.:.:.:|..|..|:..||:|||::||||.:||||.|.:||
Yeast   272 AAEALGAIASPEVVDVLKSYLNDEVDVVRESCIVALDMYDYENSNELEYA 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neroNP_651887.1 HEAT repeat 39..67 CDD:293787 17/28 (61%)
HEAT_2 43..126 CDD:290374 44/84 (52%)
EZ_HEAT 52..81 CDD:128837 13/28 (46%)
HEAT repeat 69..99 CDD:293787 18/29 (62%)
EZ_HEAT 85..114 CDD:128837 17/29 (59%)
HEAT repeat 102..127 CDD:293787 12/25 (48%)
EZ_HEAT 173..202 CDD:128837 16/28 (57%)
HEAT_2 199..278 CDD:290374 36/78 (46%)
EZ_HEAT 204..232 CDD:128837 13/27 (48%)
HEAT repeat 223..252 CDD:293787 17/28 (61%)
EZ_HEAT 237..266 CDD:128837 15/28 (54%)
HEAT repeat 254..280 CDD:293787 10/25 (40%)
LIA1NP_012604.1 HEAT 13..322 CDD:224331 144/310 (46%)
HEAT repeat 187..241 CDD:293787 27/53 (51%)
HEAT repeat 250..281 CDD:293787 17/30 (57%)
HEAT repeat 283..309 CDD:293787 10/25 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I2012
eggNOG 1 0.900 - - E1_COG1413
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6290
Inparanoid 1 1.050 250 1.000 Inparanoid score I663
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53932
OrthoFinder 1 1.000 - - FOG0004875
OrthoInspector 1 1.000 - - oto99877
orthoMCL 1 0.900 - - OOG6_101312
Panther 1 1.100 - - LDO PTHR12697
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R329
SonicParanoid 1 1.000 - - X3438
TreeFam 1 0.960 - -
1413.860

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