DRSC/TRiP Functional Genomics Resources

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Protein Alignment nero and mmd1

DIOPT Version :9

Sequence 1:NP_651887.1 Gene:nero / 43740 FlyBaseID:FBgn0261479 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_594654.1 Gene:mmd1 / 2541465 PomBaseID:SPAC30C2.02 Length:318 Species:Schizosaccharomyces pombe


Alignment Length:306 Identity:142/306 - (46%)
Similarity:199/306 - (65%) Gaps:15/306 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VSQQQIEAIGGVLNN--KERPLKERFRALFTLKNI---GGGAAIEAISKAFDDDSALLKHELAYC 61
            |.|..|:.:..||.|  |..||..|:||||:|..:   |...|::||.|||.|||.|||||:||.
pombe     6 VPQAVIDELERVLVNLDKSNPLSFRYRALFSLNALAKKGDKRAVDAIYKAFIDDSELLKHEMAYV 70

  Fly    62 LGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEE-YKQDPVVEVAETCAIA 125
            :||.....|:..|..::.|..|:.|||||||||:||:|..:.||:||: ||:||:..:.|||.:|
pombe    71 MGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPLAPIRETCELA 135

  Fly   126 LDRVRWL----QSGQKVDDSNPYASVDPSPPTAGDK-----SVTELKAIYLDAQQSLFDRYRAMF 181
            :.|::|.    ::.:|:..|...:.|||:||....:     .|.:|::..:|....||.|||.||
pombe   136 IARIQWKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYRVMF 200

  Fly   182 SLRNLRTEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEA 246
            .|||:..||:|||:.:|.||.|.|||||:|||.||:..|.|:|.|.:.||:..|..|||||.|||
pombe   201 RLRNIGNEEAVLALTDGFKDPSPLFRHEIAFVFGQMIAPASVPALIKVLENTEEVPMVRHEAAEA 265

  Fly   247 LGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYA 292
            ||.||.::|:.:|.::::||.|||.|||::||||.|||.|.:.:||
pombe   266 LGGIANDECLPVLKKFSKDDVRVVAESCIVALDMIEYEKSGDMEYA 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neroNP_651887.1 HEAT repeat 39..67 CDD:293787 18/27 (67%)
HEAT_2 43..126 CDD:290374 43/83 (52%)
EZ_HEAT 52..81 CDD:128837 11/28 (39%)
HEAT repeat 69..99 CDD:293787 15/29 (52%)
EZ_HEAT 85..114 CDD:128837 18/29 (62%)
HEAT repeat 102..127 CDD:293787 12/25 (48%)
EZ_HEAT 173..202 CDD:128837 17/28 (61%)
HEAT_2 199..278 CDD:290374 42/78 (54%)
EZ_HEAT 204..232 CDD:128837 15/27 (56%)
HEAT repeat 223..252 CDD:293787 16/28 (57%)
EZ_HEAT 237..266 CDD:128837 14/28 (50%)
HEAT repeat 254..280 CDD:293787 12/25 (48%)
mmd1NP_594654.1 HEAT 6..311 CDD:224331 140/304 (46%)
EZ_HEAT 27..59 CDD:128837 14/31 (45%)
EZ_HEAT 94..119 CDD:128837 16/24 (67%)
EZ_HEAT 192..221 CDD:128837 17/28 (61%)
HEAT repeat 210..238 CDD:293787 17/27 (63%)
EZ_HEAT 223..252 CDD:128837 16/28 (57%)
HEAT repeat 244..270 CDD:293787 14/25 (56%)
EZ_HEAT 256..285 CDD:128837 14/28 (50%)
HEAT repeat 273..299 CDD:293787 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 93 1.000 Domainoid score I1984
eggNOG 1 0.900 - - E1_COG1413
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6290
Inparanoid 1 1.050 259 1.000 Inparanoid score I751
OMA 1 1.010 - - QHG53932
OrthoFinder 1 1.000 - - FOG0004875
OrthoInspector 1 1.000 - - oto101567
orthoMCL 1 0.900 - - OOG6_101312
Panther 1 1.100 - - LDO PTHR12697
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R329
SonicParanoid 1 1.000 - - X3438
TreeFam 1 0.960 - -
1413.860

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