DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11550 and retm

DIOPT Version :9

Sequence 1:NP_651882.1 Gene:CG11550 / 43731 FlyBaseID:FBgn0039864 Length:298 Species:Drosophila melanogaster
Sequence 2:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster


Alignment Length:292 Identity:51/292 - (17%)
Similarity:101/292 - (34%) Gaps:80/292 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LTART-HLEEFFVNLDCERPEIRRAMR-----------TVSIVPLPGA----TPEGYRVILAKLD 113
            |.||. |:.:.:..| |:....||..|           .|.:...||.    ..:|..|.:.:|.
  Fly   251 LAARDWHVSQAYAML-CDSLRWRREHRIDALLAEYSKPAVVVEHFPGGWHHLDKDGRPVYILRLG 314

  Fly   114 DLNT----SNYNFADVMKLYCMVFDFWMYEDGIQP-------------GHVIVIDLKNTSLGHVA 161
            .::.    .:.....:::|...:     .|:|||.             ...:::||:..|:.|:.
  Fly   315 HMDVKGLLKSLGMDGLLRLALHI-----CEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLW 374

  Fly   162 RIGLLQMKKFLYYLQEAAAIRLIGFHFINIVPFMDKILALMTPFMKKELTTVL------------ 214
            |.|:..:...:..::.            |....|.::|.:..|.:.....|::            
  Fly   375 RPGIKALLNIIETVER------------NYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKF 427

  Fly   215 --------HMHSDLKEFYKFVPQEMLPKEYGG----QLEEANVAKEIYYK--KLLDNRKEMIEFE 265
                    ||...|.:   ::.:|::|...||    .:.|..:..:..||  .|.|:..|:....
  Fly   428 LFYGPDCAHMKDGLAQ---YLDEEIVPDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDEVTAEL 489

  Fly   266 TRHQVNEKLRPGKAKNASDLFGIEGNFKKLDI 297
            ......:.|.|||..:|:........:|.:|:
  Fly   490 PTTAAAQALVPGKRLSANQQHDHRNLYKSVDL 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11550NP_651882.1 CRAL_TRIO 94..239 CDD:279044 28/189 (15%)
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024 6/17 (35%)
CRAL_TRIO 293..456 CDD:279044 26/182 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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