DRSC/TRiP Functional Genomics Resources

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Protein Alignment kek6 and Lingo4

DIOPT Version :9

Sequence 1:NP_001263151.1 Gene:kek6 / 43729 FlyBaseID:FBgn0039862 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_001102659.1 Gene:Lingo4 / 499668 RGDID:1562025 Length:618 Species:Rattus norvegicus


Alignment Length:539 Identity:108/539 - (20%)
Similarity:175/539 - (32%) Gaps:200/539 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RSMDRRRSRTPRTLPVCW----ILLCLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTI 63
            :.||  .:..|:...:.|    .||.|...:::     ||.:.|.|  |:..::.:|:..:|.|:
  Rat    24 QGMD--AATAPKQAWLLWSPLLFLLLLPGGSIS-----SCPTLCDC--TSQTRAVLCAHRRLDTV 79

  Fly    64 PNTLSTELQVLVLNDNHIPYLNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSD 128
            |..|..:.:||.|:.|.:..|.|...|.||  .||.:.|..:::..:...:|..|:.|:.:.|..
  Rat    80 PGGLPLDTEVLDLSGNRLWGLQRGMLSRLG--QLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQG 142

  Fly   129 NKLEMLDKDTFMGNDRLR---------ILYLNG---------------NPLKRLAAYQFPILPHL 169
            |:|.::....|.|...|.         :|:|:|               |.|..:|...|..|..|
  Rat   143 NRLRIVGPGIFSGLSALTLLDLRLNQIVLFLDGAFGELGSLQQLEVGDNHLVFVAPGAFSGLAKL 207

  Fly   170 RTLDMHDCLISYI-------------------------------------------------DPM 185
            .|:.:..|.:|.:                                                 ||.
  Rat   208 STITLERCNLSTVPGLALAQLPALVALRLRELDIERLPSGALRGLGQLKELEIHHWPSLEALDPG 272

  Fly   186 SLANLNL--------------------LEF----------------------------------- 195
            ||..|||                    |.|                                   
  Rat   273 SLVGLNLSSLAITHCNLSSVPFQALHHLSFLQVLDLSQNPISAIPARRLSPLVRLQELRLSGACL 337

  Fly   196 ----------------LNLKNNLLESLSEYVFQHMANLKTLSLEENPWQCNCKLRKFRGWYVNSR 244
                            |::.:|.|::|.|..|.....|.||.|..||..|:|:|.    |.:..|
  Rat   338 TSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPLTCDCRLL----WLLRLR 398

  Fly   245 ----LSSVSLVCKGPPAQKDRTWDSVDDEL----FGCPPRVEIFNNEEVQNIDIGSNTTFSCLVY 301
                ..:....|.||...:.:......|.|    |.|.|.:...:.......:.|.:..|||...
  Rat   399 RRLDFGTSPPACAGPQHVQGKNLREFSDILPPGHFTCKPALIRKSGPRWVIAEEGGHAVFSCSGD 463

  Fly   302 GDPLPEVAW-ELNG---------KILDNDNVLFESESIASDKLWSNLTVFNVTSLDAGTYACTGS 356
            |||.|.|:| ...|         ::|::                ..|.:.:|...|.|.|.|..|
  Rat   464 GDPAPTVSWMRPQGSWLGRVGRVRVLED----------------GTLEIRSVQLRDRGAYVCVVS 512

  Fly   357 NSIGSMTQNISIYLSEIVQ 375
            |..|:  .::..:| |::|
  Rat   513 NVAGN--DSLRTWL-EVIQ 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek6NP_001263151.1 leucine-rich repeat 71..96 CDD:275380 9/24 (38%)
LRR_8 96..155 CDD:290566 16/82 (20%)
leucine-rich repeat 97..120 CDD:275380 5/22 (23%)
leucine-rich repeat 121..144 CDD:275380 6/22 (27%)
LRR_4 144..186 CDD:289563 15/114 (13%)
leucine-rich repeat 145..168 CDD:275380 9/46 (20%)
leucine-rich repeat 169..216 CDD:275380 19/166 (11%)
LRRCT 225..274 CDD:214507 13/56 (23%)
Ig 295..367 CDD:143165 20/81 (25%)
Lingo4NP_001102659.1 leucine-rich repeat 87..110 CDD:275380 9/24 (38%)
LRR_8 88..145 CDD:290566 17/58 (29%)
LRR_4 88..126 CDD:289563 12/39 (31%)
LRR_RI 110..345 CDD:238064 33/234 (14%)
leucine-rich repeat 111..134 CDD:275380 5/22 (23%)
LRR_8 134..193 CDD:290566 11/58 (19%)
leucine-rich repeat 135..158 CDD:275380 6/22 (27%)
leucine-rich repeat 159..182 CDD:275380 4/22 (18%)
LRR_8 182..237 CDD:290566 9/54 (17%)
leucine-rich repeat 183..206 CDD:275380 5/22 (23%)
leucine-rich repeat 207..230 CDD:275380 4/22 (18%)
leucine-rich repeat 231..254 CDD:275380 0/22 (0%)
leucine-rich repeat 255..302 CDD:275380 8/46 (17%)
LRR_8 278..334 CDD:290566 4/55 (7%)
leucine-rich repeat 303..326 CDD:275380 0/22 (0%)
LRR_8 326..385 CDD:290566 11/58 (19%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 351..374 CDD:275380 6/22 (27%)
IG_like 445..526 CDD:214653 22/99 (22%)
Ig 456..526 CDD:299845 21/88 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46071
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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