DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pasha and dgcr8

DIOPT Version :9

Sequence 1:NP_001263150.1 Gene:pasha / 43728 FlyBaseID:FBgn0039861 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001116221.1 Gene:dgcr8 / 563963 ZFINID:ZDB-GENE-030131-3421 Length:782 Species:Danio rerio


Alignment Length:679 Identity:243/679 - (35%)
Similarity:346/679 - (50%) Gaps:115/679 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DSGQVRKRP-------RLEDEEQELKVAGFSLSAIEEMR----------------RTRDNELQNE 52
            ||.:.:.|.       ::.||:|.|:.....|.....||                |||: ||:.|
Zfish   117 DSSKSKDRKVLYTGFGQVSDEDQSLESINGELHDSVMMRSVPGSSAMSTGFMGLARTRE-ELEAE 180

  Fly    53 PMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDE---------EEEAADGDGEEYDS 108
              .:...:|.|||      |.:|.|:|        :.|.|:.         ::|....:...|..
Zfish   181 --QENKVEFAVLD------DLEDFSEN--------FLEDGEPSAFRSQMIVQQEQVHEEDLSYSY 229

  Fly   109 SEFDDDEIENLLDEKLP-EELRESKQPKYE-----------------QRFKTVLEEKRLNHFEVL 155
            .|..|::::.||:|.:| .:.|...:.||.                 .:.||:|:.:.....|.|
Zfish   230 EEDFDNDVDALLEEGMPMPKKRRVAEDKYAGDSDHHSDGEAGVQPMMTKIKTILKSRGRPPTEPL 294

  Fly   156 PEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLGAIPCLNYRRALEEESEVEQQ 220
            |:||:...||||:|::|||:|||...||||||||||.|||..|..:||||:|::..|:|.  .:|
Zfish   295 PDGWIMTFHNSGIPVYLHRETRVVTWSRPYFLGTGSIRKHDPPTSSIPCLHYKKMKEQEE--REQ 357

  Fly   221 KTDGAPPVAVCPM-AGASALPAEAMDVEGKENNEGSTDSKTQPD--------------------G 264
            ..:..|...:.|: :|...:..|..|.......|..|...|..|                    |
Zfish   358 NGEVTPTAEISPVKSGEEGISLERADEPDSTATEEPTGRPTSEDPDLDLMEPGGSSIEGKDGQTG 422

  Fly   265 ITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFKFKVIRVLRFRSWNARRKFTKN--RKHIKN 327
            .||.....::....|..:.|||..|...:|.:|.|.|:.:.|.:||:|..||:|.::  ||..::
Zfish   423 DTAQGALGQVKAKVEVCKDESIEIEDFRSYLEKCFDFEQVTVKKFRTWAERRQFNRDMKRKQAES 487

  Fly   328 IQRPTLPDGTKLIKFPILANAGEGSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKE 392
             :||.||...|||...:        .:...:||:::||||||.|||||||:|..||.:|.|.|.|
Zfish   488 -ERPILPANQKLITLSV--------QDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFE 543

  Fly   393 LQNAATPYSATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPD-VKDKITGNNKDQKSGTAKK 456
            .:|.:.|:.|:|.::.:.||||..:|||.||::|||.|||||||| ||          ::...|.
Zfish   544 CENPSEPFGASVIIDGVTYGTGTASSKKLAKNKAARATLEILIPDFVK----------QTSEEKP 598

  Fly   457 AQSD-LSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYG-SDVQISQEINRTANNKNEFT 519
            .:.| |..|:.|.|||.||.|..||....||..||..||:||:| .|..|..|:....|.|:|:.
Zfish   599 VEGDELEYFNHISIEDSRVYELTNKAGLLSPYQILHECLKRNHGMGDTSIKFEVIPGKNQKSEYV 663

  Fly   520 MTVGKHTAKVVCKNKREGKQLASQAILQILHPHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVL 584
            ||.||||.:..|||||.|||||||.|||:||||::.||||||:||..|.|..| |:..::.:..|
Zfish   664 MTCGKHTVRGWCKNKRVGKQLASQKILQMLHPHVKNWGSLLRMYGRESNKMVK-KENSDKSVIEL 727

  Fly   585 QSKAAVNQPNYAILDKLKSEMLKLCAKQE 613
            |..|..|:||..||:||:.||:||..::|
Zfish   728 QQYAKKNKPNLHILNKLREEMMKLARERE 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pashaNP_001263150.1 DSRM 370..434 CDD:238007 33/63 (52%)
DSRM <514..549 CDD:214634 23/34 (68%)
dgcr8NP_001116221.1 WW 293..323 CDD:197736 16/29 (55%)
dsrm 522..585 CDD:278464 33/62 (53%)
dsrm 629..693 CDD:278464 35/63 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593707
Domainoid 1 1.000 147 1.000 Domainoid score I4465
eggNOG 1 0.900 - - E1_KOG4334
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11223
Inparanoid 1 1.050 353 1.000 Inparanoid score I2222
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D367580at33208
OrthoFinder 1 1.000 - - FOG0007297
OrthoInspector 1 1.000 - - oto41092
orthoMCL 1 0.900 - - OOG6_107799
Panther 1 1.100 - - LDO PTHR13482
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3423
SonicParanoid 1 1.000 - - X5401
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.790

Return to query results.
Submit another query.