DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1792 and pita

DIOPT Version :9

Sequence 1:NP_651878.1 Gene:CG1792 / 43727 FlyBaseID:FBgn0039860 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:518 Identity:108/518 - (20%)
Similarity:176/518 - (33%) Gaps:172/518 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RNCRTCGLFIFCSTP---SNLFEEPNSV-----MLHQIEVLTGLFLLGGPGNELPPFICSPCELD 60
            |.||      ||.|.   :::|||...|     :..||..:|.:.:..|.|  :|..||..|.|.
  Fly    16 RVCR------FCLTEQKLASIFEENPRVKTTANLPLQIMAITAIEVYAGDG--MPGHICLECRLL 72

  Fly    61 LQTAIAFRERVIRTQKTLQESPNLGN--------------------------------------- 86
            .:....|::...|.:..|::.|..||                                       
  Fly    73 FEHCYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLN 137

  Fly    87 -------------AELIESFAV----------------GVEKEIQYAEEVTEIEVIDLLPEEHLL 122
                         .:::||..|                ..|.::...:|::..:|..:|  |.:.
  Fly   138 TMAKSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSML--EDMA 200

  Fly   123 EETEEPYEICEQNEQPQVKVPAQEKKLRRST---------------KTTPTV------------- 159
            .|.|:.:.     :.||...|.:.|.|.:|:               ..||.|             
  Fly   201 SELEKEFP-----DIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTE 260

  Fly   160 --FTSVKFADNSQATRTQWSRLTE-------------DEVVALKR--ERRKRDCICEQCGRHFTC 207
              .:.:...|....|:......|:             .:::.:.|  ..|.|...|..|.:.|..
  Fly   261 VLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFS 325

  Fly   208 PSNFKLHLLRHTGVKSFACDQCSQQFYTATLLRRHQELHAGNALFQCRYCE-------------- 258
            ..:...|...|||.:.|.|..||:.|....||.||:..|.....|.|.|||              
  Fly   326 KYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAE 390

  Fly   259 --------------ATYSNASGRIQHERMRHTNVKPFTCKECNKSFAMSGKLRTHMLSHTGVRAF 309
                          .:::...|..:||.:..||: ||.|:.|.:||:.:.||..|:::|.|.||:
  Fly   391 RHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNL-PFPCQHCERSFSTASKLARHLVAHAGKRAY 454

  Fly   310 HCDSCQVSFVRRSHLTSHYRSKGHAHTSSAQAALDNPVELDVKASNGMQTGAKDEALLGKSGS 372
            .|..|..|::...||:.|.|:    ||.::.|:.   |..:.|.|........|.||:..:.|
  Fly   455 PCKYCHKSYMLSHHLSRHLRT----HTQTSDASF---VCSECKVSYSNYNDLLDHALIHATAS 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1792NP_651878.1 zf-AD 6..80 CDD:214871 22/81 (27%)
C2H2 Zn finger 198..218 CDD:275368 4/19 (21%)
C2H2 Zn finger 226..243 CDD:275368 7/16 (44%)
C2H2 Zn finger 254..275 CDD:275368 7/48 (15%)
zf-C2H2 281..303 CDD:278523 8/21 (38%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
zf-H2C2_2 296..320 CDD:290200 9/23 (39%)
C2H2 Zn finger 311..329 CDD:275368 6/17 (35%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 22/82 (27%)
COG5048 <281..506 CDD:227381 60/232 (26%)
C2H2 Zn finger 288..308 CDD:275368 1/19 (5%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 4/15 (27%)
C2H2 Zn finger 400..420 CDD:275368 3/19 (16%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368 7/23 (30%)
C2H2 Zn finger 486..506 CDD:275368 5/19 (26%)
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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