DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Med and smad7

DIOPT Version :9

Sequence 1:NP_524610.1 Gene:Med / 43725 FlyBaseID:FBgn0011655 Length:771 Species:Drosophila melanogaster
Sequence 2:NP_778257.2 Gene:smad7 / 326282 ZFINID:ZDB-GENE-030128-3 Length:372 Species:Danio rerio


Alignment Length:694 Identity:129/694 - (18%)
Similarity:190/694 - (27%) Gaps:376/694 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GGESEGFAKRAIESLVKKLKEKRDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFP-H 120
            |.|:|  .|....|::||:|||  :|:.|:.|:.:.|...|.|:.:....|.||   |:..:| .
Zfish    46 GTEAE--LKALTYSILKKIKEK--QLEVLLQAVESRGGARSPCLLLPGKADARL---GQHSYPLP 103

  Fly   121 VIYARIWRWPDL-HKNELKHVKYCAFAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGPSRLV 184
            ::..:::||||| |.:|||.:..|.....:..:.||.||:|..|:         ..|:|      
Zfish   104 LLLYKVFRWPDLRHSSELKRLSCCESYGKINPELVCCNPHHMSRL---------CELES------ 153

  Fly   185 KDEYSAGPLVGSMDIDGNDIGTIQHHPTQMVGPGGYGYPQGPSEYVGDANPMSAMFPTGRTIPKI 249
                                                                             
Zfish   154 ----------------------------------------------------------------- 153

  Fly   250 EPQDGVAGSRGSWMVPPPPRLGQPPQQQQQQPQQQTPQPTQQQQAQSQAAAHSLPVPHGMPGMPG 314
                                                                             
Zfish   154 ----------------------------------------------------------------- 153

  Fly   315 PMNPGPVMAPPPPPQQAQNPQGNGVHHTQANSPTDPASALAMQQQQQQQQQQQQQQQQQQQQSGG 379
                      ||||              .:..|||                              
Zfish   154 ----------PPPP--------------YSRYPTD------------------------------ 164

  Fly   380 VPNGSVNAGGGAAAGGQYYGQPPPVSQMQGAGGGGTSVAPSVHAQQNGYVSQPGSAGSAPVGGGG 444
                                                            ::..|.|.||.|     
Zfish   165 ------------------------------------------------FLKPPDSPGSVP----- 176

  Fly   445 VFGTAQPTPQQPQQPPTGVQANTGSAGAQAGAGGGAAGTWTGPNTLTYTQSMQPPDPRSLPGGFW 509
                                       |....||.|                     .|.|.|| 
Zfish   177 ---------------------------ASTETGGTA---------------------YSAPMGF- 192

  Fly   510 NSSLSGDLGSPQQTPPQQQQQQQQPRLLSRQPPPEYWCSIAYFELDTQVGETFKV--PSAKPNVI 572
            :.||:            .|::.:||          :||.:||:|..|:||..:.|  ||      
Zfish   193 SDSLA------------LQERGEQP----------HWCVVAYWEEKTRVGRLYSVQEPS------ 229

  Fly   573 IDGYVDPSGGNRFCLGALSNVHRTEQSERARLHIGKGVQLDLRGEGDVWLRCLSDNSVFVQSYYL 637
            :|.:.|...|..||||.|::.::::..:..|..||.|:||....:| ||:...|...:|::|..|
Zfish   230 LDIFYDLPQGTGFCLGQLASENKSQLVQMVRAKIGYGIQLSREADG-VWVYNRSCYPIFIKSATL 293

  Fly   638 DREAGRTPGDAVHKIYPAACIKVFDLRQCHQQMHSLATNAQAAAAAQAAAVAGVANQQMGGGGRS 702
            |....||.  .|||::|...||.||..:                       || :.|:......|
Zfish   294 DNPDSRTL--LVHKVFPGFSIKAFDFEK-----------------------AG-SLQRPNDHEFS 332

  Fly   703 MTAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWIEV 746
            .....|..|         ::|||||||..|.||.|...|||:||
Zfish   333 QQPRTGFTV---------QISFVKGWGQCYTRQFISSCPCWLEV 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MedNP_524610.1 MH1_SMAD_4 42..166 CDD:199816 37/110 (34%)
MH2_SMAD_4 543..760 CDD:199823 65/206 (32%)
smad7NP_778257.2 MH1_SMAD_7 36..152 CDD:199818 37/121 (31%)
MH2_SMAD_7 200..370 CDD:199825 67/220 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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