DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL6 and AT1G74050

DIOPT Version :9

Sequence 1:NP_651876.1 Gene:RpL6 / 43723 FlyBaseID:FBgn0039857 Length:262 Species:Drosophila melanogaster
Sequence 2:NP_177545.1 Gene:AT1G74050 / 843744 AraportID:AT1G74050 Length:233 Species:Arabidopsis thaliana


Alignment Length:248 Identity:107/248 - (43%)
Similarity:143/248 - (57%) Gaps:35/248 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVV----EKAKV--PIKKVKKIGGPKNGGERTVFL 81
            |..|..|:.:||::|||.:|.|:.:|.|...|.    .|:||  |::|..|.             
plant    13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKF------------- 64

  Fly    82 KKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVT 146
                  ||.:...|..|::......|  .|.::|||||||:||||.:|||||.||.|||||||||
plant    65 ------YPAEDVKKPLPNRRTAKPTK--LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

  Fly   147 GPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEADIFAAKKE-- 209
            |||.:|..|||||:|.||||||:|||:....: :..:|.||.::..||.||| |.:.|.|:||  
plant   122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTL-DKFDDKYFGKVAEKKKKKT-EGEFFEAEKEEK 184

  Fly   210 RFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 262
            :.:| :.:|.|||.|||||:|.|:|.||.|   .||...|:|.....||.:.|
plant   185 KEIP-QVKKDDQKAVDAALIKAIEAVPELK---TYLGARFSLKQGMKPHELVF 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL6NP_651876.1 Ribosomal_L6e_N <23..>51 CDD:281813 11/27 (41%)
KOW_RPL6 106..262 CDD:240520 83/157 (53%)
RPL14A 111..234 CDD:225074 72/124 (58%)
AT1G74050NP_177545.1 Ribosomal_L6e_N 2..61 CDD:397788 17/47 (36%)
KOW_RPL6 81..233 CDD:240520 83/159 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2820
eggNOG 1 0.900 - - E1_COG2163
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31001
Inparanoid 1 1.050 159 1.000 Inparanoid score I1646
OMA 1 1.010 - - QHG53785
OrthoDB 1 1.010 - - D1227453at2759
OrthoFinder 1 1.000 - - FOG0001826
OrthoInspector 1 1.000 - - otm3035
orthoMCL 1 0.900 - - OOG6_101188
Panther 1 1.100 - - LDO PTHR10715
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1520
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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