DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL6 and RpL27

DIOPT Version :9

Sequence 1:NP_651876.1 Gene:RpL6 / 43723 FlyBaseID:FBgn0039857 Length:262 Species:Drosophila melanogaster
Sequence 2:NP_001262966.1 Gene:RpL27 / 43103 FlyBaseID:FBgn0039359 Length:135 Species:Drosophila melanogaster


Alignment Length:164 Identity:38/164 - (23%)
Similarity:63/164 - (38%) Gaps:64/164 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 RRNLTPGTVLILLAGRHQGKRVVLLKVLASGL-------LLVTGPFALNSCPLRRVSQRYVIGTS 168
            |:.:..|.::|:|:||:.|::.:::|....|.       .||.|   ::..| |:|:::      
  Fly     2 RKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAG---IDRYP-RKVTKK------ 56

  Fly   169 SKVDLGAFKVPE--------------HL-------NDAYFRRLKAKKDKKTGEADIFAAKKERFV 212
                :|..|:.:              ||       :|..|.:| :.||.|    |....|..|| 
  Fly    57 ----MGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKL-SPKDLK----DPVKRKTHRF- 111

  Fly   213 PNEQRKKDQKEVDAALLKVIKAHPEGK---FFAK 243
                    |..|     |....:.|||   ||.|
  Fly   112 --------QTRV-----KFESVYKEGKNKWFFQK 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL6NP_651876.1 Ribosomal_L6e_N <23..>51 CDD:281813
KOW_RPL6 106..262 CDD:240520 38/164 (23%)
RPL14A 111..234 CDD:225074 32/150 (21%)
RpL27NP_001262966.1 KOW 1..135 CDD:412330 38/164 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2163
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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