DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment RpL6 and LOC306079

DIOPT Version :9

Sequence 1:	NP_651876.1	Gene:	RpL6 / 43723	FlyBaseID:	FBgn0039857	Length:	262	Species:	Drosophila melanogaster
Sequence 2:	NP_001041344.1	Gene:	LOC306079 / 306079	RGDID:	1564564	Length:	354	Species:	Rattus norvegicus

Alignment Length:	202	Identity:	50/202 - (24%)
Similarity:	68/202 - (33%)	Gaps:	78/202 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly    74 GGERTVFLKKSKASYPTKTFVK-----KRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVV 133
            |||.   |...||.:|:...:.     :|..:..|.|..|          |..:..|.|.||.|.
  Rat   116 GGES---LGPVKAQFPSVGVMPGGMPGQRDGRERFMEVDR----------VAYISFGPHAGKLVA 167

  Fly   134 LLKVLASGLLLVTGPFALNSCP-LRR--------------------VSQRYVIGTSSKVDLG--- 174
            ::.|:.....||.||     |. :||                    .||:||.....|.|:.
  Rat   168 IVDVIDQNRALVDGP-----CTRVRRQAMPFKCMQLTDFILKFPHSASQKYVQKAWEKADINTKW 227

  Fly   175 -----AFKVPEHLNDA--------YFRRLKAKKDKKTGEADIFAAKKERFVPNEQRKKDQKEVDA 226
                 |.|:     ||        .|.:.|..|.|||         :.|.:..|.:|..:    |
  Rat   228 AATRWAKKI-----DARERKGKMTNFDQFKVMKAKKT---------RNRIIKTEVKKLQR----A 274

  Fly   227 ALLKVIK 233
            ||||..|
  Rat   275 ALLKASK 281

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RpL6	NP_651876.1	Ribosomal_L6e_N	<23..>51	CDD:281813
		KOW_RPL6	106..262	CDD:240520	40/165 (24%)
		RPL14A	111..234	CDD:225074	39/160 (24%)
LOC306079	NP_001041344.1	PTZ00065	146..269	CDD:240252	35/151 (23%)
		KOW_RPL14	149..222	CDD:240512	21/87 (24%)
		Ribosomal_L14e	188..261	CDD:280163	17/86 (20%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2163
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900