DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rod and kntc1

DIOPT Version :9

Sequence 1:NP_476705.1 Gene:rod / 43719 FlyBaseID:FBgn0003268 Length:2089 Species:Drosophila melanogaster
Sequence 2:XP_012824467.2 Gene:kntc1 / 733892 XenbaseID:XB-GENE-1011946 Length:2226 Species:Xenopus tropicalis


Alignment Length:2417 Identity:477/2417 - (19%)
Similarity:903/2417 - (37%) Gaps:622/2417 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWSNFEASSLED------------ETISNIFSSRGIFQISSEEEVNKYPDVMASVQCGKMVIGID 53
            ||::.|..:.:|            |:.:.::....:.:|||.|::...|.:.|.......:|..|
 Frog     1 MWNDIELLANDDTGSCRLNIDSRQESGTALYQVDTLLKISSHEKIQCNPQLFACNSNEGCIIVAD 65

  Fly    54 KSLLLLEDELVAKCSFLAFGAAIEAIAISSSGNLIVCGLSDGEVHGVFIKGLLLFSVAVNLEDVS 118
            :|:.||:....:....|.|...::.:.:...|..::.|..:|.:|.:.:   |...:.:....|.
 Frog    66 RSVSLLDSICQSLQLQLQFDTEVDVVGLCHEGQFLLVGERNGNIHLIHV---LSRQILITKPLVQ 127

  Fly   119 LTGGTFRSIHQ--------LDQRFY--FTCKNGSIY-----SLSDIDE----------------- 151
            ....|.:..:|        .|...|  |...|..:|     .|:.|:|                 
 Frog   128 NGSKTIKPTYQKLLLERDSSDTGVYHVFVLTNEGLYCIMYFHLAQINEAIENMDFSSSKELERKI 192

  Fly   152 -TCLETLGNMSLNENETIACEKALLEDV--TIQRLSKGRSSCSVDCAVLLKRLLTGNISAENNQD 213
             ||.     :|..:..|..|...::.|:  .|..:..|:..               .:.::...|
 Frog   193 KTCF-----ISTEQYHTSGCLNLVIGDLMSDIHLIIGGKGD---------------YVLSKWKMD 237

  Fly   214 DLEAQPGLVITGDQSTMNFRNAANDVTRINLPAQYGSLKQIFNLEHYIIALTDSGHLVEICPYTR 278
            .::....|....|.|.:.                 |:.|  |.:.:.::.:.|...::.|.....
 Frog   238 PIKKHIALQGLADSSMIK-----------------GAKK--FQVLNNLLFVLDDDDILSIWDVYT 283

  Fly   279 TVYMCQTTQQKNLLIEDLL----------VMECSEDNIELLVLT-KSTAEGRFIKIVEYPTLNVK 332
            .|.:...|..:   |.|.|          |....:.|::|:.|| .:|.:.|.:.:...|.:|..
 Frog   284 FVMVWDWTSCR---ISDFLLTTEGDSSSSVSRQRDANLKLIALTAPNTKQMRNLTVYSLPAMNHL 345

  Fly   333 NEVEVPDHAWLV--------------------RQPKCAVNLYYLAAKEVNQSSIPSVVEMMLVSE 377
            ..:||.|.:.||                    |.|:|.|                ||:.:..::|
 Frog   346 YSIEVSDVSTLVQTGINMDTIYLLEGIYDSHERTPECTV----------------SVLALRCLTE 394

  Fly   378 TDPSDRFKKLICKGRLEEAEEFGKQFELCLQPIYEAKAKRILVELCNS----------------- 425
            ..|.:|..:|:.|.:.||||.|..||.|.::.:|:.|...:|.:|.::                 
 Frog   395 ALPENRLSRLLHKHKFEEAENFAIQFGLDVELVYKVKLNIVLEKLASASIGSYGQIIWQELVDEA 459

  Fly   426 --NSQNV-DTKF-------------QDLLQLLSQVESKAFIKSHRMINLNSRHILERYLHEVKKR 474
              |.|.: |..|             ...|.:|:..:::...|..:|:..:|              
 Frog   460 KGNLQKIKDDNFVIEYCINAPWPTYDTTLDMLNYAKARIQRKEDKMLPASS-------------- 510

  Fly   475 LTFEDDEEDMLEIDEQLHRLKTL-AIIDPYE-CNTDWQKFIYDNNLVRMVKSLFNTD---MPTAC 534
               :|.:..:.::.....||.|. ....|.: ....|.:|:.:..:::.:  ||:.:   :|.|.
 Frog   511 ---DDIQVSITDVLRAQARLTTFYGAFGPDKFSGIAWTEFLNNEEILKDI--LFHLEEMNLPCAQ 570

  Fly   535 LIWRRHSSSILPLLNEDELRTLLGFIPSNTKPFNVVQWLRQ-FIPMVSNTHPSIMPFITDWSIEM 598
            .:|.||........:|..|..||..||:|....::..|.:. .||.|....|.....|..|....
 Frog   571 YLWLRHQGEFESKFDEKMLEILLNAIPANIPSHDLCPWFKNILIPFVRRIVPKGQRIIAKWLEHR 635

  Fly   599 TRNLQYS--PHWPDIGLEFCTKILDIFEEIQFTYSD------------VRRQQE---RNVGKLRD 646
            .|.|:.:  ..||:.|.|..        |:.|...:            :..:::   ..|.||..
 Frog   636 ARGLELTDKADWPENGYEMA--------EVYFVSKNPGELGLASSWLWIPLKEDGDCEEVQKLMK 692

  Fly   647 LVNALQDLSVLKTNYNMGFTLDNYMQDSIDATALSILQHVQLDK----------LQRLVKNFMYP 701
            ||..||:|..|...||....|.::.::    |.::|:..: |||          |:::::.:|| 
 Frog   693 LVTNLQELVELYRKYNCKLALSDFEKE----TTVTIVFRM-LDKVLAPELIPSTLEKVIRPYMY- 751

  Fly   702 IFQEKGRQPLDVIKQYISQLV---ASRLSS---SSWLDRAMACIELLHNEDSRLECALSVLQNAP 760
               :...|..:::.|||..|:   :||.:|   ::|..:|||.|..:.:.|...:..|.::..|.
 Frog   752 ---QHNLQEEELLLQYIKDLLERCSSRSASLFETAWEAKAMAVIGCMSDTDLIFDAVLQIMYGAV 813

  Fly   761 VPWPDTLAPLIRLRAS-THPLAVKINAEY---------------------EIQVIKIMK--VKYG 801
            |||.|.:..|::.... .||....:...|                     |.|::.::|  :|..
 Frog   814 VPWSDAVEQLVKQHLEMDHPKVKLLQESYRLMEMNKLLRGYGIRGFNLANEKQIMSLVKYILKQD 878

  Fly   802 WPADSSDI----------NLELFMMRIVKL----NLPDMLDDISALTKAAPELSTSANFNCCYQM 852
            .|:...|.          .:|::::|||:|    ...|.|:.:.:||.|..|: |....:...::
 Frog   879 SPSSLEDALKIFQAYMLPFVEVYIIRIVQLIYMNRGEDCLNLLKSLTPADAEI-TIERLSLWARI 942

  Fly   853 ARR----GQVEMAYEFFKKLNGEKNSKS-AKEVVEIM--------ANILENSSSASFESDIKVQE 904
            |.:    |..|.          :|:.|. ||.:|||:        .|:|:   |...|:::::.|
 Frog   943 ALQENPGGSEEC----------KKDQKMIAKTLVEILKFQMCAQKENLLK---SELCEANLQMFE 994

  Fly   905 HL-NVLELFKLFLPHVESVYERRYLVIKHRFRLRKFGILL-----------SCSSELIPLHRRHC 957
            .: |:.|.|.:|| .:|. ||.|.||    .:||...|:.           ..:|||.|......
 Frog   995 AISNLQEDFDIFL-SIED-YENRVLV----SQLRDEHIIAYETTKSKSKNSGKTSELNPTFDEKT 1053

  Fly   958 LLDEAIERIIERAQATLNVSAFIASEISELCTALGLPKVFGLHRICQRIGCLPLSCALAYHVVSF 1022
            .:.....|:...|.........:.:|::  ..||...||....:||:.:        ..:|    
 Frog  1054 KIPSTESRLYRLALLLQVTEQELGAELA--LRALAFGKVEKALQICREL--------YEHH---- 1104

  Fly  1023 VDCVPANAGEFVNLALELLVQQIESAKGKNQETASSLQLINENDPLSFYLAYELLTSALLHESSR 1087
              |.| ..|..:.|..:.|...:|:                 |.|:.......|  .|:::|.|.
 Frog  1105 --CNP-QTGHLLFLVSQKLSDMLEA-----------------NTPMVIPAGMNL--PAVIYELSC 1147

  Fly  1088 RH----------DLVELIKYIRVAVIHY---------------PLDAIKSHYDGKEQAVNEHICR 1127
            :.          |.:||.||.::|:..|               ...|.:..|:  |....|:...
 Frog  1148 QASTICSPDLLLDALELCKYTQLAMEFYKQCQIEDYGFIAKTATFGADRDQYE--EWTYEEYFSE 1210

  Fly  1128 ALDGISVALGETTINFSCALNGSFDVKTLTVPTTT-KKRYSVSMFDEVEVQPIQQQ----PQKKS 1187
              |||       .::....|..::|:.|..||:|. ||.|.:..........::.:    |.|..
 Frog  1211 --DGI-------VLDPLIVLPVAYDITTALVPSTAGKKMYPLDCACLANCPYVKGENFLLPAKTP 1266

  Fly  1188 VGGRMAIVKFL-----ARTLLLMVIET--------EPNNSLLMQVRNELPENTKADVESACAD-- 1237
            :   ..:|:.|     ....|.:||.|        ..||     :.|:|  :||...|...|:  
 Frog  1267 I---TVLVENLQECSQCELTLRLVIRTFGTCLQHGVSNN-----MENQL--STKLYDEKVLAETN 1321

  Fly  1238 --FFLSLEHLTKVKEHDAWYVMSQYLLDFQKQNCRTKRI-INEGFIT-LQLRRIFR---NAMGSK 1295
              .|...|.:..:.:..|..::.:..      |||.... :..|:.| |..:.:|:   :.:.:.
 Frog  1322 AFIFAFGEKIATLIKDTAMALLHKVF------NCRVVDCDLALGYCTLLSKKEVFKKLWDVINNA 1380

  Fly  1296 DVNFIELFTMLVVDSEALALL----------EKLSVEVKTDLQKINF-LTLSAMYHEHIEDLDSV 1349
            ..|:.::..:.||.:: ||||          |:|.::.:..:|..|| ::..:::.:..|....:
 Frog  1381 WQNYTKIQAVAVVGAQ-LALLYNEDEERRKFEELIIDAEWGIQLSNFGISFQSVFRQRSERKKEL 1444

  Fly  1350 --HMIRTKRLKLFYYLEFCQQDHRIKGKFNADMD-----NIEDLLKEFHNKQLDVQLLERMSKDF 1407
              .::::..:.....|::|       ..|..|.|     .:|.||       |.....:|...|.
 Frog  1445 LGTLVQSSHVDTGLILKYC-------STFKLDSDAALQLYVETLL-------LSASNCKRGEGDS 1495

  Fly  1408 GFDYQKILITQILSILSAQELRFEVKRDTFGDEELVMLSSAQEMRDMCQPYINEINNVELFTSKL 1472
            ..||  :.......:..|:|:             :.:|.|.|.:                 ...|
 Frog  1496 TKDY--VQTPHSDPVKKAKEI-------------IPLLKSTQHL-----------------VVSL 1528

  Fly  1473 KHFIEDINIYFYELYMCVINILMYFDSAPKEMEIWMNILHFLRHKMITRRRNRPGQVETDTWLKS 1537
            ...:..::.|.||....|:.:::..|.....::: ...|..:.|....:|...|..:|....|  
 Frog  1529 SGILHKLDPYDYETIEGVLQVILVADEKNTNIQL-SQALGLINHLKSCKRIAPPSDLEHQYIL-- 1590

  Fly  1538 QRENGV-MPKISRYRLPFKPI---VEQPLKDILDSELNVDNCQSWFPLIQMYTALKGSKDSSQNC 1598
              |:|: ||..::.||||..:   .......|:.:||:.::    ||     |.|..||....:.
 Frog  1591 --EHGIAMPPTAQTRLPFHLLFFTTASSFWGIISAELSEES----FP-----TLLLISKLMKVSL 1644

  Fly  1599 DYFCMSAVKNSISE------YKSKNDSESWSLHPTNNAFLQSILRL---VEKVNNPNKAFLILYF 1654
            |...|.|.|:...:      .|.|| :|.:|:  .|....:::|.:   ::.::||..|..|.:.
 Frog  1645 DTLYMMASKHVFEKNLRPKALKLKN-AEHFSI--INKDTAKTVLTIQSYLQSISNPEWAAAIAHK 1706

  Fly  1655 VSNYARDGADQVEASYEC------WK---FVKEKGHLITDPKSREQVAKVKRRYPIQKTQHLLYV 1710
            ::.....|.|::.|...|      ||   ..|:..|    .|:...:.|:..:|....|:::|..
 Frog  1707 IAQELPTGPDKIHALKFCLHLAEKWKKNILPKDDAH----EKADVFIKKLSVQYQRSATENVLIT 1767

  Fly  1711 YGLTDEKLLRQVENPTELIQALYHHELILKSSKV-------DINALVAEIAKLHDLCLATIQYRL 1768
            :.|...:.|:|:..|..||.:||.|..:.:..:.       ||:..|.:|:::::|.::.|...|
 Frog  1768 HKLNTPEFLKQIGKPANLIVSLYEHSSVEQRIRYPTGRDYPDIHMAVKQISEVNNLNMSRICTLL 1832

  Fly  1769 LQKWL---ALTMESAGDGTILEETFMEEQNWPEQANGAESSNSQDASENVNRAFYILSSWPKAEA 1830
            |:||:   ||                     |:.....:........|::.|..|:|..:|...:
 Frog  1833 LEKWICPPAL---------------------PQADKSKDVFGDIHGDEDLRRVIYLLQPYPVDYS 1876

  Fly  1831 VKFLVGLIFKGGSVNTSTQL------QMYECYSKLNDGSNSFTNTISQRQFISIK-----CVH-- 1882
            .:.|..:.....|.....||      :..:|...|.|  .....::.::....:|     |::  
 Frog  1877 SRMLYAIATSATSPIGDNQLTYAHRSRALQCLIHLAD--TDIVVSLIKKPIDEVKYYLKCCIYLS 1939

  Fly  1883 ELKALGYKSNLEKFSDDHCN-KIDILKMIWQRNAQNPLSLEVMANICLGFDIHLPQIWNGILKRM 1946
            |.:.|.....||.|   |.: |..::|.:|:.::..|.:::::..:.|.:.::.||:|.|:|:::
 Frog  1940 EFEFLNIPYTLESF---HSSPKEGMIKGLWKNHSHEPRAVKLVTELSLEYKVYDPQLWGGLLQKI 2001

  Fly  1947 VMFHMVRELNALLDVLSCRPHLLHLDGLAQAWDYVLCHPLQNAVELRSFKQEEVLHKTLLRLQGC 2011
            :.|:::..|..:|..:|....|..:...::||...:..|...|....|..|.|..::..:.|..|
 Frog  2002 LGFNLMHYLRKVLVAISGVHCLWEIPNFSRAWRSAILSPFITASCPPSPSQMEECYECFVVLLKC 2066

  Fly  2012 PVVHALNLL----QFAQL--------CIVVHRPHM------AASLLSFCQSSEQRQKIKKMIHSH 2058
            ||:..|:::    |:||:        |::: .|||      ....||.|......|::...:::.
 Frog  2067 PVLADLDVVGIAKQYAQIDLPAFTLGCLLL-IPHMEKREQQIQGFLSTCNPETVLQQVADCMNTG 2130

  Fly  2059 PVENLRQQILDL 2070
            .|.....||.||
 Frog  2131 EVAGFASQIRDL 2142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rodNP_476705.1 Rod_C 1544..2082 CDD:287465 128/590 (22%)
kntc1XP_012824467.2 Rod_C 519..>774 CDD:402219 60/273 (22%)
Rod_C 1593..2141 CDD:402219 127/590 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 144 1.000 Domainoid score I4602
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 257 1.000 Inparanoid score I3072
OMA 1 1.010 - - QHG52014
OrthoDB 1 1.010 - - D122381at2759
OrthoFinder 1 1.000 - - FOG0007375
OrthoInspector 1 1.000 - - oto104975
Panther 1 1.100 - - LDO PTHR15688
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3830
SonicParanoid 1 1.000 - - X6266
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.200

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