DRSC/TRiP Functional Genomics Resources

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Protein Alignment pygo and col-44

DIOPT Version :9

Sequence 1:NP_651872.1 Gene:pygo / 43718 FlyBaseID:FBgn0043900 Length:815 Species:Drosophila melanogaster
Sequence 2:NP_510274.1 Gene:col-44 / 186211 WormBaseID:WBGene00000621 Length:304 Species:Caenorhabditis elegans


Alignment Length:260 Identity:78/260 - (30%)
Similarity:91/260 - (35%) Gaps:74/260 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   492 NSAGPSPGMPNSGPSPLQ-SPAGPNGPNNNNSNNNNGPMMGQMIPNAVPMQHQQHMGGGPPGHGP 555
            :|.|...|..|.||..:. :|..|..|..                            .|.||: |
 Worm    97 SSGGQCEGCCNPGPPGVAGNPGKPGKPGK----------------------------PGAPGN-P 132

  Fly   556 GPMPGMGM-----NQMLPPQQPSHLGPPHPNMMNHPHHPHHHPGGPPPHMMGGPGMHGGPAGMPP 615
            | .||.|.     .:..||.:|...|||.|               |.|....||....|.||.| 
 Worm   133 G-APGKGAAVPCEAKTPPPCKPCPAGPPGP---------------PGPDGPAGPAGPDGEAGSP- 180

  Fly   616 HMGGGPNPHMMGGPHGNAGPHMGHGHMGGVPGPGPGPGGMNGPPHPHMSPHHGHPHHHHNPMGGP 680
               ..|:|....||.|.||| .|:....|.||| .||.|.:..|.|......|.|    .|.|.|
 Worm   181 ---AAPSPPGPPGPSGPAGP-AGNDGAAGTPGP-DGPAGESTYPEPAAPGPAGPP----GPAGPP 236

  Fly   681 GPN----MFGGGGGGPMGPGGPMGNMGPMG----GGPMG-----GPMGVGPKPMTMGGGKMYPPG 732
            ||:    ....|..||.||.||.|..||.|    .||.|     |..|:.||...:.||..:..|
 Worm   237 GPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGGEGEKGICPKYCAIDGGIFFEDG 301

  Fly   733  732
             Worm   302  301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pygoNP_651872.1 PHD_dPYGO 749..802 CDD:277107
col-44NP_510274.1 Col_cuticle_N 14..66 CDD:198156
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5715
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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