DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gammaCOP and AT4G34450

DIOPT Version :9

Sequence 1:NP_001263145.1 Gene:gammaCOP / 43717 FlyBaseID:FBgn0028968 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_195171.2 Gene:AT4G34450 / 829596 AraportID:AT4G34450 Length:886 Species:Arabidopsis thaliana


Alignment Length:889 Identity:440/889 - (49%)
Similarity:587/889 - (66%) Gaps:38/889 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EKDDEEDG--PSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDC 69
            :|||:.|.  ..:.:..:||.:||||.|.||:..|:||:|..::||:|||:||||.....|||:.
plant     7 KKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGESFTKVEATEV 71

  Fly    70 FFAMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDN 134
            ||::||||||||..|||||||.|||||..:::||||||||.|||..|.|:|||.|||.||.|.|.
plant    72 FFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAIRVLCRIIDG 136

  Fly   135 TMLQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHALGL 199
            |:|..:|||:||.|||||..||.|||||.|.|..|..::||||:||.||.:.|.:.:||:|||.|
plant   137 TLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSNEVQEGIQSRSALVQFHALAL 201

  Fly   200 LYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSE-ELSDSPLFTFIESCL 263
            |:.||::|||||||||..|||||::||.|.|:|||...::|  .|:.:. :..:.|.:.|:||||
plant   202 LHQIRQNDRLAVSKLVGSLTRGSVRSPLAQCLLIRYTSQVI--RDMANHGQSGERPFYEFLESCL 264

  Fly   264 RHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTT 328
            |||:||||.|||.||..|.....|.|:||.::||||.|||:..|||||||||||||||||.|||.
plant   265 RHKAEMVILEAARAITELDGVTSRELTPAITVLQLFLSSPRPVLRFAAVRTLNKVAMTHPMAVTN 329

  Fly   329 CNLDLEGLITDSNRSVATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTK 393
            ||:|:|.||:|.|||:||||||||||||.|||||||||||:.|:::|:||||:|||.||.:||.|
plant   330 CNIDMESLISDQNRSIATLAITTLLKTGNESSVERLMKQITNFMSDIADEFKIVVVDAIRSLCVK 394

  Fly   394 YPRKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCEFIEDCEHVSLAVR 458
            :|.|:..||.|||.:||||||.|||.:|||:|:|||.:..|||||||.||||||||||...|:.:
plant   395 FPLKYRSLMTFLSNILREEGGFEYKRAIVDSIVTIIRDIPDAKESGLLHLCEFIEDCEFTYLSTQ 459

  Fly   459 ILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAAVTAMAQFGASCPALLSNILVLLGRCQMD 523
            |||.||.|||..:.||||||:|||||.||:..||||||:.:|:||....:|...|.|||.||..|
plant   460 ILHFLGIEGPNTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGFMVESLKPRITVLLKRCIYD 524

  Fly   524 PDDEVRDRATYYLSILNS----ERPELYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVP 584
            .|||||||||.|||:|..    :..:..|:::.......|..:|.||..:  ...:..|||:.||
plant   525 SDDEVRDRATLYLSVLGGDGTVDTDKESKDFLFGSLEVPLVNMETSLKNY--EPSEEAFDINSVP 587

  Fly   585 KAAIVKPVIANDVMLVTSSAPRPPKITREEESAAR--------LAQLPGIQVLGPIHRSTAPIQL 641
            |....:|:...     .:...:|..:.....:.|.        |:.:|.....|.:.:|:.|::|
plant   588 KEVKSQPLAEK-----KAQGKKPTGLGAPPAAPASGFDGYERLLSSIPEFAAFGKLFKSSLPVEL 647

  Fly   642 TESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILE--NVRVELTLPEGF---TTRAVIPCPKLP 701
            ||:||||.|..:||||..|||||::|.||:.:|:||  ||.|:.:..|.|   |::|:   ..||
plant   648 TEAETEYAVNVVKHIFDSHVVFQYNCTNTIPEQLLERVNVIVDASEAEEFSEVTSKAL---NSLP 709

  Fly   702 YNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPESEEGYDDEYMLEDLELTVADQI 766
            |:.....||:.| .|....::..|..||.||||:.||:|||.| ::|.:|||.|||||:...|.:
plant   710 YDSPGQAFVVFE-KPAGVPAVGKFSNTLTFVVKEVDPSTGEAE-DDGVEDEYQLEDLEVVAGDYM 772

  Fly   767 QKTRKNNFQVSWDAADSEEWLQAEDTFVLSAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHT 831
            .|...:||:.:|::.|.|:  :..|.:.|....:|.:||..::.:||:.....:|.:|.....||
plant   773 VKVGVSNFRNAWESMDEED--ERVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHT 835

  Fly   832 LLCSGTFRGGAEILVRAKLAL--SEGVTLNLTVRSTDQDVAELI 873
            .|.||.:.|..::||||:..:  |:.:.:.||||:.|..|||.|
plant   836 CLLSGVYIGNVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAI 879

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaCOPNP_001263145.1 SEC21 11..877 CDD:227565 437/885 (49%)
HEAT repeat 402..427 CDD:293787 17/24 (71%)
HEAT repeat 439..465 CDD:293787 17/25 (68%)
HEAT repeat 475..505 CDD:293787 20/29 (69%)
HEAT repeat 512..538 CDD:293787 18/25 (72%)
COP-gamma_platf 620..761 CDD:285908 64/145 (44%)
Coatomer_g_Cpla 763..877 CDD:292991 36/113 (32%)
AT4G34450NP_195171.2 SEC21 7..879 CDD:227565 439/887 (49%)
HEAT repeat 403..428 CDD:293787 17/24 (71%)
HEAT repeat 440..466 CDD:293787 17/25 (68%)
HEAT repeat 476..504 CDD:293787 18/27 (67%)
HEAT repeat 513..539 CDD:293787 18/25 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 613 1.000 Domainoid score I34
eggNOG 1 0.900 - - E1_COG5240
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56292
Inparanoid 1 1.050 790 1.000 Inparanoid score I91
OMA 1 1.010 - - QHG53896
OrthoDB 1 1.010 - - D255234at2759
OrthoFinder 1 1.000 - - FOG0002163
OrthoInspector 1 1.000 - - oto3635
orthoMCL 1 0.900 - - OOG6_101348
Panther 1 1.100 - - LDO PTHR10261
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1625
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.